Variant report

Variant	rs62011509
Chromosome Location	chr15:78330703-78330704
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11630013	1.00[ASN][1000 genomes]
rs11635115	1.00[ASN][1000 genomes]
rs11635268	1.00[ASN][1000 genomes]
rs16969502	1.00[ASN][1000 genomes]
rs17398057	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17399424	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34057735	1.00[ASN][1000 genomes]
rs4438275	1.00[ASN][1000 genomes]
rs4887008	1.00[ASN][1000 genomes]
rs55829894	1.00[ASN][1000 genomes]
rs55914317	1.00[ASN][1000 genomes]
rs57778149	1.00[ASN][1000 genomes]
rs59075488	1.00[ASN][1000 genomes]
rs60790001	1.00[ASN][1000 genomes]
rs62008166	1.00[ASN][1000 genomes]
rs62008596	1.00[ASN][1000 genomes]
rs62011472	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs62011473	0.82[AMR][1000 genomes]
rs62011474	0.82[AMR][1000 genomes]
rs62011475	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62011476	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62011479	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62011482	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62011483	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62011510	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62011512	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62011516	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62011518	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62011519	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62011521	0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7163268	1.00[ASN][1000 genomes]
rs7163579	1.00[ASN][1000 genomes]
rs7165474	1.00[ASN][1000 genomes]
rs7182599	1.00[ASN][1000 genomes]
rs7183671	1.00[ASN][1000 genomes]
rs74024166	1.00[ASN][1000 genomes]
rs74024170	1.00[ASN][1000 genomes]
rs8028842	1.00[ASN][1000 genomes]
rs894298	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv1051558	chr15:78315542-78364947	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78296200-78358200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr15:78301400-78342200	Weak transcription	HMEC	breast
3	chr15:78303200-78342400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr15:78307200-78342000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr15:78309200-78330800	Weak transcription	A549	lung
6	chr15:78309200-78354200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr15:78316000-78332400	Weak transcription	Hela-S3	cervix
8	chr15:78317000-78344400	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr15:78317400-78342600	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr15:78317800-78331000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr15:78317800-78344400	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr15:78317800-78344400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr15:78320200-78334400	Weak transcription	Aorta	Aorta
14	chr15:78320400-78331800	Weak transcription	Esophagus	oesophagus
15	chr15:78321200-78343800	Weak transcription	NHEK	skin
16	chr15:78322200-78336600	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr15:78322200-78341000	Weak transcription	Brain Germinal Matrix	brain
18	chr15:78322400-78336600	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr15:78324000-78332200	Enhancers	Primary monocytes fromperipheralblood	blood
20	chr15:78324600-78334400	Weak transcription	Ovary	ovary
21	chr15:78325600-78337800	Genic enhancers	Fetal Thymus	thymus
22	chr15:78325800-78333600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
23	chr15:78326000-78331600	Enhancers	HUVEC	blood vessel
24	chr15:78326200-78332000	Genic enhancers	Fetal Intestine Small	intestine
25	chr15:78326200-78332800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
26	chr15:78326400-78331600	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr15:78326400-78332000	Genic enhancers	Fetal Muscle Leg	muscle
28	chr15:78326600-78331200	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr15:78326600-78331200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr15:78326600-78331400	Enhancers	Spleen	Spleen
31	chr15:78326600-78332000	Genic enhancers	Placenta	Placenta
32	chr15:78326600-78332000	Genic enhancers	Sigmoid Colon	Sigmoid Colon
33	chr15:78327400-78330800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
34	chr15:78327400-78339600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr15:78327600-78331000	Enhancers	Thymus	Thymus
36	chr15:78327600-78331600	Genic enhancers	Rectal Mucosa Donor 29	rectum
37	chr15:78327600-78332000	Enhancers	Primary hematopoietic stem cells	blood
38	chr15:78327600-78333600	Enhancers	Primary T helper cells fromperipheralblood	blood
39	chr15:78327600-78351400	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr15:78327800-78342000	Enhancers	Primary T killer memory cells from peripheral blood	blood
41	chr15:78328000-78332200	Enhancers	Small Intestine	intestine
42	chr15:78328000-78334600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr15:78328000-78335400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
44	chr15:78328000-78336600	Weak transcription	Fetal Brain Female	brain
45	chr15:78328000-78336800	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr15:78328000-78341800	Weak transcription	Fetal Brain Male	brain
47	chr15:78328200-78332000	Enhancers	Primary B cells from cord blood	blood
48	chr15:78328200-78334200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr15:78328400-78330800	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr15:78328400-78331000	Enhancers	Duodenum Mucosa	Duodenum

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