Variant report

Variant	rs62011510
Chromosome Location	chr15:78332518-78332519
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:78331100..78333926-chr15:78382964..78385819,2	K562	blood:

Variant related genes	Relation type
ENSG00000199633	Chromatin interaction
ENSG00000183476	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11630013	1.00[ASN][1000 genomes]
rs11635115	1.00[ASN][1000 genomes]
rs11635268	1.00[ASN][1000 genomes]
rs16969502	1.00[ASN][1000 genomes]
rs17398057	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17399424	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34057735	1.00[ASN][1000 genomes]
rs4438275	1.00[ASN][1000 genomes]
rs4887008	1.00[ASN][1000 genomes]
rs55829894	1.00[ASN][1000 genomes]
rs55914317	1.00[ASN][1000 genomes]
rs57778149	1.00[ASN][1000 genomes]
rs59075488	1.00[ASN][1000 genomes]
rs60790001	1.00[ASN][1000 genomes]
rs62008166	1.00[ASN][1000 genomes]
rs62008596	1.00[ASN][1000 genomes]
rs62011472	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs62011473	0.82[AMR][1000 genomes]
rs62011474	0.82[AMR][1000 genomes]
rs62011475	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62011476	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62011479	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62011482	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62011483	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62011509	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62011512	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62011516	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62011518	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62011519	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62011521	0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7163268	1.00[ASN][1000 genomes]
rs7163579	1.00[ASN][1000 genomes]
rs7165474	1.00[ASN][1000 genomes]
rs7182599	1.00[ASN][1000 genomes]
rs7183671	1.00[ASN][1000 genomes]
rs74024166	1.00[ASN][1000 genomes]
rs74024170	1.00[ASN][1000 genomes]
rs8028842	1.00[ASN][1000 genomes]
rs894298	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv1051558	chr15:78315542-78364947	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78296200-78358200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr15:78301400-78342200	Weak transcription	HMEC	breast
3	chr15:78303200-78342400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr15:78307200-78342000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr15:78309200-78354200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr15:78317000-78344400	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr15:78317400-78342600	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr15:78317800-78344400	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr15:78317800-78344400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr15:78320200-78334400	Weak transcription	Aorta	Aorta
11	chr15:78321200-78343800	Weak transcription	NHEK	skin
12	chr15:78322200-78336600	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr15:78322200-78341000	Weak transcription	Brain Germinal Matrix	brain
14	chr15:78322400-78336600	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr15:78324600-78334400	Weak transcription	Ovary	ovary
16	chr15:78325600-78337800	Genic enhancers	Fetal Thymus	thymus
17	chr15:78325800-78333600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
18	chr15:78326200-78332800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
19	chr15:78327400-78339600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr15:78327600-78333600	Enhancers	Primary T helper cells fromperipheralblood	blood
21	chr15:78327600-78351400	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr15:78327800-78342000	Enhancers	Primary T killer memory cells from peripheral blood	blood
23	chr15:78328000-78334600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr15:78328000-78335400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
25	chr15:78328000-78336600	Weak transcription	Fetal Brain Female	brain
26	chr15:78328000-78336800	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr15:78328000-78341800	Weak transcription	Fetal Brain Male	brain
28	chr15:78328200-78334200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr15:78328400-78333000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr15:78328400-78333400	Enhancers	Monocytes-CD14+_RO01746	blood
31	chr15:78328400-78333800	Enhancers	Primary T helper naive cells from peripheral blood	blood
32	chr15:78328400-78334000	Weak transcription	Osteobl	bone
33	chr15:78328400-78334200	Weak transcription	NHLF	lung
34	chr15:78328400-78334800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr15:78328400-78339000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr15:78328400-78342200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr15:78328600-78333200	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
38	chr15:78328600-78333200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr15:78328600-78334200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr15:78328600-78334600	Weak transcription	Fetal Kidney	kidney
41	chr15:78328600-78336400	Weak transcription	NH-A	brain
42	chr15:78328600-78342200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr15:78328800-78332600	Strong transcription	Stomach Smooth Muscle	stomach
44	chr15:78329000-78332600	Strong transcription	Fetal Lung	lung
45	chr15:78329000-78332600	Genic enhancers	Dnd41	blood
46	chr15:78329000-78342400	Weak transcription	Fetal Heart	heart
47	chr15:78329400-78336200	Weak transcription	Colon Smooth Muscle	Colon
48	chr15:78329600-78332800	Genic enhancers	Adipose Nuclei	Adipose
49	chr15:78329600-78339000	Weak transcription	Stomach Mucosa	stomach
50	chr15:78330200-78332800	Strong transcription	HSMMtube	muscle

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