Variant report

Variant	rs62008166
Chromosome Location	chr15:78233147-78233148
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:78232364..78235120-chr15:78235300..78238762,3	K562	blood:

Variant related genes	Relation type
ENSG00000214646	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11630013	1.00[ASN][1000 genomes]
rs11635115	1.00[ASN][1000 genomes]
rs11635268	1.00[ASN][1000 genomes]
rs16969502	1.00[ASN][1000 genomes]
rs17398057	1.00[ASN][1000 genomes]
rs17399424	1.00[ASN][1000 genomes]
rs34057735	1.00[ASN][1000 genomes]
rs4438275	1.00[ASN][1000 genomes]
rs4887008	1.00[ASN][1000 genomes]
rs55829894	1.00[ASN][1000 genomes]
rs55914317	1.00[ASN][1000 genomes]
rs57778149	1.00[ASN][1000 genomes]
rs59075488	1.00[ASN][1000 genomes]
rs60790001	1.00[ASN][1000 genomes]
rs62008596	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62008631	1.00[AFR][1000 genomes]
rs62011475	1.00[ASN][1000 genomes]
rs62011476	1.00[ASN][1000 genomes]
rs62011479	1.00[ASN][1000 genomes]
rs62011482	1.00[ASN][1000 genomes]
rs62011483	1.00[ASN][1000 genomes]
rs62011509	1.00[ASN][1000 genomes]
rs62011510	1.00[ASN][1000 genomes]
rs62011512	1.00[ASN][1000 genomes]
rs62011516	1.00[ASN][1000 genomes]
rs62011518	1.00[ASN][1000 genomes]
rs62011519	1.00[ASN][1000 genomes]
rs62011521	1.00[ASN][1000 genomes]
rs7163268	1.00[ASN][1000 genomes]
rs7163579	1.00[ASN][1000 genomes]
rs7182599	1.00[ASN][1000 genomes]
rs7183671	1.00[ASN][1000 genomes]
rs74024166	1.00[ASN][1000 genomes]
rs74024170	1.00[ASN][1000 genomes]
rs8028842	1.00[ASN][1000 genomes]
rs894298	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1806097	chr15:77817889-78301377	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
3	esv1833316	chr15:78081307-78328108	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	nsv904426	chr15:78090630-78264164	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv904427	chr15:78129964-78251431	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv976954	chr15:78153346-78255825	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv904429	chr15:78160362-78251431	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78226800-78236200	Weak transcription	Spleen	Spleen
2	chr15:78231400-78236400	Weak transcription	Placenta	Placenta
3	chr15:78231600-78236400	Weak transcription	HSMM	muscle
4	chr15:78231800-78234400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr15:78231800-78236200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr15:78231800-78236400	Weak transcription	Fetal Lung	lung
7	chr15:78232200-78236400	Weak transcription	HSMMtube	muscle
8	chr15:78232800-78236200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr15:78233000-78233200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr15:78233000-78233400	Flanking Active TSS	HepG2	liver
11	chr15:78233000-78236200	Weak transcription	Fetal Intestine Small	intestine
12	chr15:78233000-78236200	Weak transcription	Fetal Muscle Leg	muscle
13	chr15:78233000-78236400	Weak transcription	Fetal Intestine Large	intestine
14	chr15:78233000-78236800	Weak transcription	Esophagus	oesophagus

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