Variant report

Variant	rs34057735
Chromosome Location	chr15:78398230-78398231
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:78298725..78300979-chr15:78395838..78398547,2	K562	blood:
2	chr15:78394209..78398078-chr15:78398123..78400882,3	MCF-7	breast:
3	chr15:78392111..78393882-chr15:78397751..78399759,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11630013	1.00[ASN][1000 genomes]
rs11635115	1.00[ASN][1000 genomes]
rs11635268	1.00[ASN][1000 genomes]
rs16969502	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17398057	1.00[ASN][1000 genomes]
rs17399424	1.00[ASN][1000 genomes]
rs4438275	1.00[ASN][1000 genomes]
rs4887008	1.00[ASN][1000 genomes]
rs55829894	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55914317	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57778149	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59075488	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60790001	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61347580	0.82[EUR][1000 genomes]
rs62008166	1.00[ASN][1000 genomes]
rs62008596	1.00[ASN][1000 genomes]
rs62011475	1.00[ASN][1000 genomes]
rs62011476	1.00[ASN][1000 genomes]
rs62011479	1.00[ASN][1000 genomes]
rs62011482	1.00[ASN][1000 genomes]
rs62011483	1.00[ASN][1000 genomes]
rs62011509	1.00[ASN][1000 genomes]
rs62011510	1.00[ASN][1000 genomes]
rs62011512	1.00[ASN][1000 genomes]
rs62011516	1.00[ASN][1000 genomes]
rs62011518	1.00[ASN][1000 genomes]
rs62011519	1.00[ASN][1000 genomes]
rs62011521	1.00[ASN][1000 genomes]
rs7163268	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7163579	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7165474	1.00[ASN][1000 genomes]
rs7182599	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7183671	1.00[ASN][1000 genomes]
rs74024166	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74024170	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8028842	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs894298	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	esv274890	chr15:78396447-78402258	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78385200-78400600	Weak transcription	Pancreas	Pancrea
2	chr15:78392000-78400600	Strong transcription	Thymus	Thymus
3	chr15:78393200-78406000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr15:78393400-78401200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr15:78393800-78399200	Enhancers	Primary T cells fromperipheralblood	blood
6	chr15:78394200-78399200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr15:78394600-78398600	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr15:78394600-78398800	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr15:78394800-78398600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr15:78394800-78398600	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr15:78394800-78398800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr15:78394800-78398800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr15:78394800-78398800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr15:78394800-78399000	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr15:78395000-78398600	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr15:78395000-78398800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
17	chr15:78395000-78405600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr15:78395200-78398400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr15:78395200-78398600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
20	chr15:78395200-78398600	Genic enhancers	Fetal Thymus	thymus
21	chr15:78395200-78399000	Enhancers	Duodenum Mucosa	Duodenum
22	chr15:78395400-78398600	Enhancers	Spleen	Spleen
23	chr15:78395400-78405600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr15:78395600-78398800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr15:78395600-78399200	Genic enhancers	Fetal Intestine Small	intestine
26	chr15:78395800-78398400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr15:78395800-78398400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr15:78395800-78398600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
29	chr15:78395800-78400200	Strong transcription	Fetal Brain Female	brain
30	chr15:78396000-78400000	Strong transcription	Brain Germinal Matrix	brain
31	chr15:78396000-78405400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr15:78396200-78398400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr15:78396200-78398400	Weak transcription	Stomach Mucosa	stomach
34	chr15:78396200-78398600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr15:78396200-78399000	Enhancers	GM12878-XiMat	blood
36	chr15:78396200-78399200	Enhancers	Placenta	Placenta
37	chr15:78396200-78400600	Weak transcription	Primary B cells from peripheral blood	blood
38	chr15:78396200-78400600	Weak transcription	Right Atrium	heart
39	chr15:78396200-78405600	Weak transcription	Brain Anterior Caudate	brain
40	chr15:78396200-78421800	Weak transcription	Right Ventricle	heart
41	chr15:78396400-78398600	Enhancers	Primary T cells from cord blood	blood
42	chr15:78396400-78404000	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr15:78396400-78405400	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr15:78396600-78398600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr15:78396600-78405400	Weak transcription	Primary neutrophils fromperipheralblood	blood
46	chr15:78396600-78405600	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr15:78396600-78423800	Weak transcription	Placenta Amnion	Placenta Amnion
48	chr15:78396800-78399000	Genic enhancers	Fetal Intestine Large	intestine
49	chr15:78396800-78401400	Strong transcription	Fetal Stomach	stomach
50	chr15:78397000-78398400	Strong transcription	HUES6 Cell Line	embryonic stem cell

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