Variant report

Variant	rs1168084
Chromosome Location	chr1:63111528-63111529
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10889346	1.00[AMR][1000 genomes]
rs1168007	0.83[YRI][hapmap]
rs1168012	1.00[ASW][hapmap];0.91[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs1168014	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1168019	1.00[AMR][1000 genomes]
rs1168024	0.83[YRI][hapmap]
rs1168033	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1168037	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1168039	1.00[AMR][1000 genomes]
rs1168043	0.84[ASW][hapmap];0.90[LWK][hapmap]
rs1168090	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1168092	0.90[YRI][hapmap];1.00[AMR][1000 genomes]
rs1168095	0.90[YRI][hapmap];1.00[AMR][1000 genomes]
rs1168101	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1168105	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1168115	0.84[ASW][hapmap]
rs1168123	0.90[YRI][hapmap];1.00[AMR][1000 genomes]
rs1183265	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1628350	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs1690764	0.89[YRI][hapmap];1.00[AMR][1000 genomes]
rs17123733	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1748186	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1748191	1.00[ASW][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs1748193	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1781194	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1781197	1.00[AMR][1000 genomes]
rs2769486	1.00[AMR][1000 genomes]
rs4329539	0.90[YRI][hapmap];1.00[AMR][1000 genomes]
rs6587979	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74078654	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7515054	0.90[YRI][hapmap]
rs7522249	1.00[ASW][hapmap];1.00[LWK][hapmap];0.91[MKK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817371	chr1:62901935-63129697	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv1014376	chr1:62976472-63181359	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv870559	chr1:63057136-63113719	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:63036800-63113600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr1:63066800-63112200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr1:63082200-63121000	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr1:63082800-63132600	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr1:63083400-63119000	Weak transcription	Fetal Thymus	thymus
6	chr1:63084800-63121000	Weak transcription	Small Intestine	intestine
7	chr1:63085400-63113600	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr1:63088000-63134600	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr1:63096200-63121000	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr1:63096400-63114000	Weak transcription	Spleen	Spleen
11	chr1:63096800-63129400	Weak transcription	Esophagus	oesophagus
12	chr1:63097000-63113800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr1:63097800-63115400	Weak transcription	Colonic Mucosa	Colon
14	chr1:63098000-63121400	Weak transcription	HUVEC	blood vessel
15	chr1:63099600-63122800	Weak transcription	Brain Angular Gyrus	brain
16	chr1:63099600-63137000	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr1:63105600-63113600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr1:63106200-63113600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr1:63106200-63114000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
20	chr1:63106200-63115200	Strong transcription	HepG2	liver
21	chr1:63106400-63111600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr1:63106400-63113400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr1:63107200-63120400	Weak transcription	Colon Smooth Muscle	Colon
24	chr1:63107200-63121000	Weak transcription	Brain Hippocampus Middle	brain
25	chr1:63107200-63122600	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr1:63107200-63122600	Weak transcription	Gastric	stomach
27	chr1:63107400-63112000	Weak transcription	Brain Anterior Caudate	brain
28	chr1:63107400-63112000	Weak transcription	Fetal Muscle Trunk	muscle
29	chr1:63107400-63112000	Weak transcription	Ovary	ovary
30	chr1:63107400-63113800	Weak transcription	Aorta	Aorta
31	chr1:63107400-63117600	Weak transcription	Brain Substantia Nigra	brain
32	chr1:63107400-63118600	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr1:63107400-63119400	Weak transcription	Monocytes-CD14+_RO01746	blood
34	chr1:63107400-63119800	Weak transcription	Stomach Smooth Muscle	stomach
35	chr1:63107400-63120800	Weak transcription	Thymus	Thymus
36	chr1:63107400-63121400	Weak transcription	HSMMtube	muscle
37	chr1:63107400-63122400	Weak transcription	Left Ventricle	heart
38	chr1:63107400-63122800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr1:63107400-63122800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr1:63107400-63122800	Weak transcription	Lung	lung
41	chr1:63107400-63124800	Weak transcription	Right Ventricle	heart
42	chr1:63107400-63129600	Weak transcription	NHLF	lung
43	chr1:63107400-63132200	Weak transcription	Brain Germinal Matrix	brain
44	chr1:63107400-63151200	Weak transcription	Pancreas	Pancrea
45	chr1:63107600-63147800	Weak transcription	NHEK	skin
46	chr1:63108200-63120200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr1:63108400-63114000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr1:63108600-63113800	Strong transcription	HSMM	muscle
49	chr1:63108600-63114000	Strong transcription	NHDF-Ad	bronchial
50	chr1:63108800-63113200	Strong transcription	Duodenum Mucosa	Duodenum

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