The 2.0 version of rSNPBase

Variant report

Variant rs1781197
Chromosome Location chr1:62999129-62999130
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:103 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:62939600-62999800 Weak transcription Gastric stomach
2 chr1:62939600-63040600 Weak transcription Aorta Aorta
3 chr1:62939800-63044400 Weak transcription Placenta Amnion Placenta Amnion
4 chr1:62939800-63060200 Weak transcription Small Intestine intestine
5 chr1:62941000-63001000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
6 chr1:62941600-63011800 Weak transcription Brain Hippocampus Middle brain
7 chr1:62941800-63030200 Weak transcription Brain Angular Gyrus brain
8 chr1:62954000-63003400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
9 chr1:62954000-63053400 Weak transcription Fetal Brain Male brain
10 chr1:62957800-63050200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
11 chr1:62958200-63010800 Weak transcription Brain Substantia Nigra brain
12 chr1:62958200-63061000 Weak transcription Lung lung
13 chr1:62960200-62999800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
14 chr1:62960400-63004400 Weak transcription Primary T helper cells fromperipheralblood blood
15 chr1:62960400-63011800 Weak transcription Pancreas Pancrea
16 chr1:62968400-63000200 Weak transcription Primary hematopoietic stem cells blood
17 chr1:62977000-63004800 Weak transcription NHLF lung
18 chr1:62978600-62999600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
19 chr1:62978800-63002000 Weak transcription NH-A brain
20 chr1:62979200-63026200 Weak transcription Skeletal Muscle Female skeletal muscle
21 chr1:62979400-62999200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
22 chr1:62979600-62999600 Weak transcription Stomach Smooth Muscle stomach
23 chr1:62979600-63000000 Weak transcription Left Ventricle heart
24 chr1:62979600-63030200 Weak transcription NHEK skin
25 chr1:62981400-63003400 Weak transcription Fetal Kidney kidney
26 chr1:62981600-63004600 Weak transcription Brain Inferior Temporal Lobe brain
27 chr1:62982800-63010200 Weak transcription A549 lung
28 chr1:62984200-63028000 Weak transcription Esophagus oesophagus
29 chr1:62984600-63005200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
30 chr1:62985400-62999400 Weak transcription Brain Germinal Matrix brain
31 chr1:62985400-62999600 Weak transcription Fetal Brain Female brain
32 chr1:62985400-63001000 Weak transcription Dnd41 blood
33 chr1:62985400-63001800 Weak transcription Colon Smooth Muscle Colon
34 chr1:62985400-63004600 Weak transcription HSMMtube muscle
35 chr1:62985400-63026200 Weak transcription Primary B cells from cord blood blood
36 chr1:62989200-63002400 Weak transcription iPS-20b Cell Line embryonic stem cell
37 chr1:62990400-63005400 Weak transcription Thymus Thymus
38 chr1:62990800-63006400 Weak transcription Hela-S3 cervix
39 chr1:62991000-63027200 Weak transcription Brain Cingulate Gyrus brain
40 chr1:62991200-63010600 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
41 chr1:62991200-63025800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
42 chr1:62991400-63010200 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
43 chr1:62991800-63002400 Weak transcription H1 Cell Line embryonic stem cell
44 chr1:62992000-62999600 Weak transcription Fetal Intestine Small intestine
45 chr1:62992000-63001200 Weak transcription ES-WA7 Cell Line embryonic stem cell
46 chr1:62993000-63022000 Weak transcription GM12878-XiMat blood
47 chr1:62994000-63003200 Weak transcription Osteobl bone
48 chr1:62994000-63051000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
49 chr1:62994400-63006800 Weak transcription HUVEC blood vessel
50 chr1:62994800-63028600 Weak transcription Right Ventricle heart

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Last update: Aug 31, 2015