The 2.0 version of rSNPBase

Variant report

Variant rs4329539
Chromosome Location chr1:63026822-63026823
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:90 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:62939600-63040600 Weak transcription Aorta Aorta
2 chr1:62939800-63044400 Weak transcription Placenta Amnion Placenta Amnion
3 chr1:62939800-63060200 Weak transcription Small Intestine intestine
4 chr1:62941800-63030200 Weak transcription Brain Angular Gyrus brain
5 chr1:62954000-63053400 Weak transcription Fetal Brain Male brain
6 chr1:62957800-63050200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
7 chr1:62958200-63061000 Weak transcription Lung lung
8 chr1:62979600-63030200 Weak transcription NHEK skin
9 chr1:62984200-63028000 Weak transcription Esophagus oesophagus
10 chr1:62991000-63027200 Weak transcription Brain Cingulate Gyrus brain
11 chr1:62994000-63051000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
12 chr1:62994800-63028600 Weak transcription Right Ventricle heart
13 chr1:62995000-63030200 Weak transcription Spleen Spleen
14 chr1:63000200-63037000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
15 chr1:63000200-63054400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
16 chr1:63001400-63028400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
17 chr1:63003000-63037400 Weak transcription iPS-20b Cell Line embryonic stem cell
18 chr1:63003200-63045200 Weak transcription Gastric stomach
19 chr1:63005400-63037400 Weak transcription HUES6 Cell Line embryonic stem cell
20 chr1:63005400-63037400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
21 chr1:63005600-63030000 Weak transcription Brain Inferior Temporal Lobe brain
22 chr1:63005600-63050200 Weak transcription NHLF lung
23 chr1:63007200-63056200 Weak transcription Brain Anterior Caudate brain
24 chr1:63007200-63096200 Weak transcription HUVEC blood vessel
25 chr1:63007600-63040400 Weak transcription Fetal Muscle Trunk muscle
26 chr1:63007800-63028400 Weak transcription Fetal Adrenal Gland Adrenal Gland
27 chr1:63007800-63037400 Weak transcription Left Ventricle heart
28 chr1:63007800-63040600 Weak transcription Sigmoid Colon Sigmoid Colon
29 chr1:63008400-63038000 Weak transcription Duodenum Smooth Muscle Duodenum
30 chr1:63008400-63053200 Weak transcription Osteobl bone
31 chr1:63008600-63037400 Weak transcription Primary hematopoietic stem cells short term culture blood
32 chr1:63009600-63037800 Weak transcription HSMM muscle
33 chr1:63010800-63078400 Weak transcription A549 lung
34 chr1:63012600-63029200 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
35 chr1:63013800-63027600 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
36 chr1:63017800-63027000 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
37 chr1:63017800-63057600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
38 chr1:63018000-63051200 Weak transcription Colonic Mucosa Colon
39 chr1:63019200-63028000 Weak transcription Primary T helper naive cells fromperipheralblood blood
40 chr1:63019600-63028200 Weak transcription Primary T helper cells PMA-I stimulated --
41 chr1:63019600-63028400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
42 chr1:63019800-63052400 Weak transcription HMEC breast
43 chr1:63020000-63028000 Weak transcription Fetal Stomach stomach
44 chr1:63020000-63028400 Weak transcription Fetal Intestine Small intestine
45 chr1:63020200-63027600 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
46 chr1:63020400-63027600 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
47 chr1:63021600-63037400 Weak transcription Ovary ovary
48 chr1:63021600-63058800 Weak transcription Stomach Smooth Muscle stomach
49 chr1:63021600-63061400 Weak transcription Pancreas Pancrea
50 chr1:63021800-63037800 Weak transcription HUES64 Cell Line embryonic stem cell

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Last update: Aug 31, 2015