The 2.0 version of rSNPBase

Variant report

Variant rs2769486
Chromosome Location chr1:63149736-63149737
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:82 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:63107400-63151200 Weak transcription Pancreas Pancrea
2 chr1:63108800-63151200 Weak transcription Fetal Stomach stomach
3 chr1:63109200-63150200 Weak transcription Fetal Brain Male brain
4 chr1:63111400-63150200 Weak transcription Fetal Lung lung
5 chr1:63112400-63152400 Weak transcription Fetal Muscle Trunk muscle
6 chr1:63113600-63151000 Weak transcription Primary hematopoietic stem cells blood
7 chr1:63113600-63152800 Weak transcription Primary B cells from cord blood blood
8 chr1:63118000-63150800 Weak transcription Duodenum Mucosa Duodenum
9 chr1:63119800-63150200 Weak transcription Adipose Nuclei Adipose
10 chr1:63128800-63150800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
11 chr1:63138000-63153000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
12 chr1:63138400-63151000 Weak transcription Fetal Intestine Large intestine
13 chr1:63138600-63150800 Weak transcription Fetal Adrenal Gland Adrenal Gland
14 chr1:63138800-63150000 Weak transcription Stomach Mucosa stomach
15 chr1:63141400-63152600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
16 chr1:63142800-63152400 Weak transcription Duodenum Smooth Muscle Duodenum
17 chr1:63143000-63150800 Weak transcription Ovary ovary
18 chr1:63143000-63151400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
19 chr1:63143000-63152400 Weak transcription H9 Cell Line embryonic stem cell
20 chr1:63143000-63153000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
21 chr1:63143200-63150800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
22 chr1:63143200-63150800 Weak transcription Primary hematopoietic stem cells short term culture blood
23 chr1:63143200-63151200 Weak transcription Aorta Aorta
24 chr1:63143200-63151200 Weak transcription Fetal Muscle Leg muscle
25 chr1:63143400-63150000 Weak transcription NHLF lung
26 chr1:63143400-63150800 Weak transcription Fetal Heart heart
27 chr1:63143800-63150200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
28 chr1:63147400-63151000 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
29 chr1:63147600-63150600 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
30 chr1:63147600-63150600 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
31 chr1:63147600-63150800 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
32 chr1:63147600-63151000 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
33 chr1:63147600-63152600 Enhancers Cortex derived primary cultured neurospheres brain
34 chr1:63147800-63151200 Enhancers Breast Myoepithelial Primary Cells Breast
35 chr1:63148000-63150000 Genic enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
36 chr1:63148000-63150000 Weak transcription Liver Liver
37 chr1:63148000-63150600 Enhancers Brain Germinal Matrix brain
38 chr1:63148000-63150800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
39 chr1:63148200-63150800 Weak transcription Gastric stomach
40 chr1:63148200-63152600 Weak transcription Rectal Mucosa Donor 29 rectum
41 chr1:63148400-63150000 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
42 chr1:63148400-63150200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
43 chr1:63148400-63150800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
44 chr1:63148400-63152600 Weak transcription H1 Cell Line embryonic stem cell
45 chr1:63148600-63150000 Weak transcription ES-I3 Cell Line embryonic stem cell
46 chr1:63148600-63150000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
47 chr1:63148600-63150200 Weak transcription A549 lung
48 chr1:63148600-63150200 Weak transcription GM12878-XiMat blood
49 chr1:63148600-63150600 Weak transcription NH-A brain
50 chr1:63148600-63150800 Weak transcription Rectal Smooth Muscle rectum

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Last update: Aug 31, 2015