The 2.0 version of rSNPBase

Variant report

Variant rs1168090
Chromosome Location chr1:63114560-63114561
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:101 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:63082200-63121000 Weak transcription Primary T helper cells PMA-I stimulated --
2 chr1:63082800-63132600 Weak transcription H1 Cell Line embryonic stem cell
3 chr1:63083400-63119000 Weak transcription Fetal Thymus thymus
4 chr1:63084800-63121000 Weak transcription Small Intestine intestine
5 chr1:63088000-63134600 Weak transcription H9 Cell Line embryonic stem cell
6 chr1:63096200-63121000 Weak transcription Primary T helper cells fromperipheralblood blood
7 chr1:63096800-63129400 Weak transcription Esophagus oesophagus
8 chr1:63097800-63115400 Weak transcription Colonic Mucosa Colon
9 chr1:63098000-63121400 Weak transcription HUVEC blood vessel
10 chr1:63099600-63122800 Weak transcription Brain Angular Gyrus brain
11 chr1:63099600-63137000 Weak transcription Pancreatic Islets Pancreatic Islet
12 chr1:63106200-63115200 Strong transcription HepG2 liver
13 chr1:63107200-63120400 Weak transcription Colon Smooth Muscle Colon
14 chr1:63107200-63121000 Weak transcription Brain Hippocampus Middle brain
15 chr1:63107200-63122600 Weak transcription Brain Inferior Temporal Lobe brain
16 chr1:63107200-63122600 Weak transcription Gastric stomach
17 chr1:63107400-63117600 Weak transcription Brain Substantia Nigra brain
18 chr1:63107400-63118600 Weak transcription Skeletal Muscle Male skeletal muscle
19 chr1:63107400-63119400 Weak transcription Monocytes-CD14+_RO01746 blood
20 chr1:63107400-63119800 Weak transcription Stomach Smooth Muscle stomach
21 chr1:63107400-63120800 Weak transcription Thymus Thymus
22 chr1:63107400-63121400 Weak transcription HSMMtube muscle
23 chr1:63107400-63122400 Weak transcription Left Ventricle heart
24 chr1:63107400-63122800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
25 chr1:63107400-63122800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
26 chr1:63107400-63122800 Weak transcription Lung lung
27 chr1:63107400-63124800 Weak transcription Right Ventricle heart
28 chr1:63107400-63129600 Weak transcription NHLF lung
29 chr1:63107400-63132200 Weak transcription Brain Germinal Matrix brain
30 chr1:63107400-63151200 Weak transcription Pancreas Pancrea
31 chr1:63107600-63147800 Weak transcription NHEK skin
32 chr1:63108200-63120200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
33 chr1:63108800-63151200 Weak transcription Fetal Stomach stomach
34 chr1:63109000-63124200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
35 chr1:63109000-63130600 Weak transcription Fetal Intestine Small intestine
36 chr1:63109000-63147800 Weak transcription Sigmoid Colon Sigmoid Colon
37 chr1:63109200-63117200 Weak transcription Fetal Kidney kidney
38 chr1:63109200-63143000 Weak transcription Fetal Muscle Leg muscle
39 chr1:63109200-63150200 Weak transcription Fetal Brain Male brain
40 chr1:63109400-63118800 Weak transcription iPS-20b Cell Line embryonic stem cell
41 chr1:63109400-63120400 Weak transcription Brain Cingulate Gyrus brain
42 chr1:63109400-63121800 Weak transcription Fetal Adrenal Gland Adrenal Gland
43 chr1:63109600-63121200 Weak transcription Psoas Muscle Psoas
44 chr1:63110200-63126200 Weak transcription NH-A brain
45 chr1:63110200-63140800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
46 chr1:63110400-63116000 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
47 chr1:63110600-63120800 Weak transcription Primary B cells from peripheral blood blood
48 chr1:63110800-63117400 Weak transcription GM12878-XiMat blood
49 chr1:63111000-63117800 Weak transcription Rectal Mucosa Donor 29 rectum
50 chr1:63111000-63119400 Weak transcription Primary monocytes fromperipheralblood blood

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Last update: Aug 31, 2015