Variant report

Variant	rs11727560
Chromosome Location	chr4:100662154-100662155
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:100661884..100664648-chr4:100870323..100871859,2	K562	blood:

Variant related genes	Relation type
ENSG00000164032	Chromatin interaction
ENSG00000245322	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1027223	0.85[AMR][1000 genomes]
rs1115721	0.85[AMR][1000 genomes]
rs11722443	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11729858	1.00[EUR][1000 genomes]
rs12640222	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs12642668	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12643245	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13111133	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13111603	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13118288	0.85[AMR][1000 genomes]
rs13123629	0.85[AMR][1000 genomes]
rs13124255	0.85[AMR][1000 genomes]
rs13150247	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1426734	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1586756	0.85[AMR][1000 genomes]
rs17029387	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1816197	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1834659	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35215295	0.80[AMR][1000 genomes]
rs36098323	0.85[AMR][1000 genomes]
rs56411289	0.96[EUR][1000 genomes]
rs61705069	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6846293	0.92[EUR][1000 genomes]
rs71614607	0.85[AMR][1000 genomes]
rs71614614	0.96[EUR][1000 genomes]
rs71614615	0.96[EUR][1000 genomes]
rs7688255	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7691498	0.80[ASN][1000 genomes]

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links