Variant report

Variant	rs11740871
Chromosome Location	chr5:74149372-74149373
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr5:74149039-74149453	HepG2	liver:	n/a	n/a
2	POLR2A	chr5:74149100-74149477	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
FAM169A	TF binding region

Extended variants
information (count: 107 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:107)

rs_ID	r²[population]
rs10062244	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs1043968	0.92[JPT][hapmap]
rs10515189	0.91[CEU][hapmap];0.91[CHB][hapmap];0.83[JPT][hapmap]
rs10515191	1.00[JPT][hapmap]
rs11556477	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11739122	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs11741789	0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs11742773	0.80[ASN][1000 genomes]
rs11746069	0.91[CEU][hapmap];0.91[CHB][hapmap];0.83[JPT][hapmap]
rs11746611	0.83[CEU][hapmap];0.83[CHB][hapmap];0.83[JPT][hapmap]
rs11747965	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs11749137	0.92[JPT][hapmap];0.80[ASN][1000 genomes]
rs11948188	1.00[JPT][hapmap]
rs11955898	0.92[JPT][hapmap]
rs1350097	0.92[JPT][hapmap];0.80[ASN][1000 genomes]
rs1447453	0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs1531103	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs15694	0.85[JPT][hapmap]
rs16872333	0.83[ASN][1000 genomes]
rs16872346	1.00[JPT][hapmap]
rs16872347	0.83[ASN][1000 genomes]
rs16872364	0.83[ASN][1000 genomes]
rs16878945	0.80[YRI][hapmap];0.88[AFR][1000 genomes]
rs17670701	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17670867	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17670897	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17670975	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17671140	0.89[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17738111	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17738266	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17738565	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17738645	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17738674	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17852781	0.81[ASN][1000 genomes]
rs1812122	0.81[ASN][1000 genomes]
rs1992712	1.00[CEU][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1993370	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1993372	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2044410	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2061162	0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs2084116	0.80[ASN][1000 genomes]
rs2084118	0.80[ASN][1000 genomes]
rs2084119	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2100033	0.80[ASN][1000 genomes]
rs3733794	1.00[JPT][hapmap]
rs3932895	0.84[ASN][1000 genomes]
rs3968877	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs4594835	0.83[ASN][1000 genomes]
rs56068548	0.83[ASN][1000 genomes]
rs56202905	0.83[ASN][1000 genomes]
rs58184895	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61093699	0.81[ASN][1000 genomes]
rs62366366	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62366371	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62366373	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62366406	0.81[ASN][1000 genomes]
rs62366413	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62366414	0.80[ASN][1000 genomes]
rs62366415	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62366416	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62366418	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62366419	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62366420	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62366421	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62366423	0.83[ASN][1000 genomes]
rs62366424	0.83[ASN][1000 genomes]
rs62366426	0.83[ASN][1000 genomes]
rs62366450	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62366453	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62366454	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62366455	0.83[ASN][1000 genomes]
rs62366456	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62366457	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62366458	0.83[ASN][1000 genomes]
rs62366459	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62367765	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62367766	0.83[ASN][1000 genomes]
rs62367767	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6453077	0.85[JPT][hapmap]
rs6453084	1.00[JPT][hapmap]
rs6453086	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs6453087	1.00[JPT][hapmap]
rs6866082	1.00[JPT][hapmap]
rs6873067	0.83[ASN][1000 genomes]
rs6874094	0.80[ASN][1000 genomes]
rs6874609	1.00[JPT][hapmap]
rs6877116	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs6877442	0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs6879781	0.91[JPT][hapmap]
rs6882499	0.92[JPT][hapmap];0.80[ASN][1000 genomes]
rs6883061	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs6884843	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs6885093	0.85[JPT][hapmap]
rs6885675	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs6890815	0.80[ASN][1000 genomes]
rs6897698	0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs6897904	0.83[ASN][1000 genomes]
rs72764640	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72764681	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7708203	0.85[JPT][hapmap]
rs7717223	0.83[ASN][1000 genomes]
rs7724292	0.83[ASN][1000 genomes]
rs7728889	0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs820828	1.00[CEU][hapmap];0.91[CHB][hapmap];0.83[JPT][hapmap];0.81[EUR][1000 genomes]
rs820830	0.90[CEU][hapmap];0.90[CHB][hapmap];0.83[JPT][hapmap]
rs820834	1.00[CEU][hapmap];0.90[CHB][hapmap];0.83[JPT][hapmap];0.81[EUR][1000 genomes]
rs9686657	1.00[JPT][hapmap];0.80[ASN][1000 genomes]

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74069000-74153000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:74140200-74157800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr5:74140600-74160000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr5:74142800-74151000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr5:74144400-74149400	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr5:74146000-74151200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr5:74146400-74149400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr5:74146600-74149400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr5:74147200-74150000	Enhancers	HepG2	liver
10	chr5:74147200-74151000	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr5:74147400-74151200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr5:74147400-74161000	Weak transcription	Primary T cells from cord blood	blood
13	chr5:74147600-74149400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr5:74147800-74149400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr5:74148000-74149400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr5:74148200-74151200	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr5:74148200-74161200	Weak transcription	Right Atrium	heart
18	chr5:74148400-74150600	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr5:74148400-74158000	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr5:74148600-74150400	Weak transcription	Brain Anterior Caudate	brain
21	chr5:74148600-74156800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr5:74148600-74158000	Weak transcription	Brain Cingulate Gyrus	brain
23	chr5:74148600-74159400	Weak transcription	HMEC	breast
24	chr5:74148600-74159800	Weak transcription	Primary T helper cells fromperipheralblood	blood
25	chr5:74148800-74151400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr5:74148800-74160000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr5:74148800-74160600	Weak transcription	A549	lung
28	chr5:74148800-74160800	Weak transcription	Primary hematopoietic stem cells	blood
29	chr5:74149000-74157600	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr5:74149000-74157600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr5:74149200-74149400	Enhancers	H9 Cell Line	embryonic stem cell
32	chr5:74149200-74149400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr5:74149200-74149400	Enhancers	Primary hematopoietic stem cells short term culture	blood
34	chr5:74149200-74149400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
35	chr5:74149200-74149400	Enhancers	Primary T killer memory cells from peripheral blood	blood
36	chr5:74149200-74149400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr5:74149200-74155800	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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