Variant report

Variant	rs62367767
Chromosome Location	chr5:74158236-74158237
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr5:74158169-74158810	HepG2	liver:	n/a	n/a
2	POLR2A	chr5:74157571-74158386	HepG2	liver:	n/a	n/a
3	POLR2A	chr5:74158107-74158382	H1-hESC	embryonic stem cell:	n/a	n/a
4	POLR2A	chr5:74157619-74158952	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:73983818..73985346-chr5:74157692..74159898,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000271714	TF binding region

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10062244	0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs11556477	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11740871	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1531103	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16878945	0.88[AFR][1000 genomes]
rs17670701	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17670867	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17670897	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17670975	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17671140	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17738111	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17738266	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17738565	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17738645	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17738674	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1992712	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1993372	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2084119	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58184895	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60663580	0.81[ASN][1000 genomes]
rs62366366	0.81[EUR][1000 genomes]
rs62366371	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62366373	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62366413	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62366415	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62366416	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62366418	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62366419	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62366420	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62366421	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62366450	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62366453	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62366454	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62366456	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62366457	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62366459	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62367765	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72764640	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72764681	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs820828	0.81[EUR][1000 genomes]
rs820834	0.81[EUR][1000 genomes]

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74140600-74160000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr5:74147400-74161000	Weak transcription	Primary T cells from cord blood	blood
3	chr5:74148200-74161200	Weak transcription	Right Atrium	heart
4	chr5:74148600-74159400	Weak transcription	HMEC	breast
5	chr5:74148600-74159800	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr5:74148800-74160000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr5:74148800-74160600	Weak transcription	A549	lung
8	chr5:74148800-74160800	Weak transcription	Primary hematopoietic stem cells	blood
9	chr5:74149400-74160600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr5:74149400-74160800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr5:74153400-74159600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr5:74156400-74159600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr5:74156600-74158600	Enhancers	H1 Cell Line	embryonic stem cell
14	chr5:74156800-74158800	Enhancers	Primary T helper naive cells from peripheral blood	blood
15	chr5:74157200-74158600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr5:74157200-74161000	Enhancers	Primary T helper cells PMA-I stimulated	--
17	chr5:74157400-74159400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr5:74157600-74158400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr5:74157600-74158600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
20	chr5:74157600-74158600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
21	chr5:74157600-74158600	Enhancers	Brain Substantia Nigra	brain
22	chr5:74157600-74158800	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
23	chr5:74157600-74159000	Enhancers	Brain Angular Gyrus	brain
24	chr5:74157600-74159200	Enhancers	iPS-15b Cell Line	embryonic stem cell
25	chr5:74157800-74158400	Enhancers	H9 Cell Line	embryonic stem cell
26	chr5:74157800-74159000	Transcr. at gene 5' and 3'	HepG2	liver
27	chr5:74157800-74159400	Weak transcription	NHEK	skin
28	chr5:74157800-74159600	Enhancers	Brain Anterior Caudate	brain
29	chr5:74157800-74160000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
30	chr5:74157800-74160000	Enhancers	Brain Hippocampus Middle	brain
31	chr5:74157800-74160800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr5:74158000-74158400	Flanking Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr5:74158000-74158400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr5:74158000-74159200	Enhancers	Brain Cingulate Gyrus	brain
35	chr5:74158000-74160000	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
36	chr5:74158000-74160200	Enhancers	Brain Inferior Temporal Lobe	brain
37	chr5:74158200-74158400	Enhancers	Dnd41	blood
38	chr5:74158200-74158600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
39	chr5:74158200-74158600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr5:74158200-74159400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
41	chr5:74158200-74159600	Weak transcription	Fetal Brain Male	brain
42	chr5:74158200-74160200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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