Variant report

Variant	rs62366366
Chromosome Location	chr5:74006245-74006246
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr5:74005958-74006450	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
HEXB	TF binding region

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10062244	0.81[ASN][1000 genomes]
rs10515189	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11556477	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11740871	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11741464	0.82[EUR][1000 genomes]
rs11743415	0.82[EUR][1000 genomes]
rs11746069	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11746611	0.82[EUR][1000 genomes]
rs11746717	0.86[ASN][1000 genomes]
rs1531103	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17670605	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17670701	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17670867	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17670897	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17670975	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17671140	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17738111	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17738266	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17738565	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17738645	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17738674	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1992712	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1993372	0.82[ASN][1000 genomes]
rs2084119	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58184895	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62366371	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62366373	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62366375	0.82[EUR][1000 genomes]
rs62366376	0.82[EUR][1000 genomes]
rs62366413	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62366415	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62366416	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62366418	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62366419	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62366420	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62366421	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62366450	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62366453	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62366454	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62366456	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62366457	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62366459	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62367765	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62367767	0.81[EUR][1000 genomes]
rs72764640	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72764681	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs820825	0.83[ASN][1000 genomes]
rs820827	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs820828	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs820830	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs820832	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs820833	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs820834	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs820835	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv598653	chr5:73992881-74095542	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:73982000-74017400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr5:73982000-74061800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:73982200-74020600	Weak transcription	Fetal Brain Male	brain
4	chr5:73983000-74017400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr5:73983000-74027000	Weak transcription	Fetal Heart	heart
6	chr5:73983200-74030200	Weak transcription	Small Intestine	intestine
7	chr5:73983400-74016000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr5:73987200-74017400	Weak transcription	Fetal Kidney	kidney
9	chr5:73987600-74014800	Weak transcription	Fetal Lung	lung
10	chr5:73988400-74021000	Weak transcription	Right Ventricle	heart
11	chr5:73990000-74016200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr5:73990400-74013600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr5:73993400-74014400	Weak transcription	Stomach Mucosa	stomach
14	chr5:73993400-74017400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr5:73993800-74014600	Weak transcription	Brain Cingulate Gyrus	brain
16	chr5:73993800-74014600	Weak transcription	HSMMtube	muscle
17	chr5:73993800-74019800	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr5:73995000-74009800	Weak transcription	HMEC	breast
19	chr5:73998800-74013800	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr5:73999600-74014600	Weak transcription	Rectal Smooth Muscle	rectum
21	chr5:73999600-74015000	Weak transcription	HepG2	liver
22	chr5:73999600-74016000	Weak transcription	Fetal Muscle Leg	muscle
23	chr5:73999800-74010200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr5:73999800-74014200	Weak transcription	Brain Hippocampus Middle	brain
25	chr5:73999800-74014200	Weak transcription	Fetal Muscle Trunk	muscle
26	chr5:73999800-74014800	Weak transcription	NHLF	lung
27	chr5:73999800-74016000	Weak transcription	Thymus	Thymus
28	chr5:73999800-74017600	Weak transcription	Aorta	Aorta
29	chr5:73999800-74060800	Weak transcription	Pancreas	Pancrea
30	chr5:73999800-74062200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr5:74000000-74014400	Weak transcription	Colon Smooth Muscle	Colon
32	chr5:74000000-74016000	Weak transcription	Lung	lung
33	chr5:74000000-74017600	Weak transcription	Psoas Muscle	Psoas
34	chr5:74000200-74016200	Weak transcription	Hela-S3	cervix
35	chr5:74001000-74013600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr5:74001200-74013800	Weak transcription	Primary T helper cells PMA-I stimulated	--
37	chr5:74001800-74013000	Weak transcription	GM12878-XiMat	blood
38	chr5:74002000-74008400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr5:74002000-74008400	Weak transcription	Primary T helper cells fromperipheralblood	blood
40	chr5:74002000-74012200	Weak transcription	NHEK	skin
41	chr5:74002000-74013600	Weak transcription	HSMM	muscle
42	chr5:74002000-74013600	Weak transcription	K562	blood
43	chr5:74002000-74014600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr5:74002000-74014600	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr5:74002200-74008400	Weak transcription	Monocytes-CD14+_RO01746	blood
46	chr5:74002200-74009800	Weak transcription	Primary B cells from cord blood	blood
47	chr5:74002200-74010000	Weak transcription	Liver	Liver
48	chr5:74002200-74010800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr5:74002200-74012600	Weak transcription	Primary T cells from cord blood	blood
50	chr5:74002200-74013600	Weak transcription	A549	lung

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