Variant report

Variant	rs1992712
Chromosome Location	chr5:74134243-74134244
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:74132469..74134995-chr5:74135998..74138912,3	K562	blood:

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs10062244	0.99[ASN][1000 genomes]
rs10515189	0.91[CEU][hapmap]
rs11556477	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11739122	0.80[ASN][1000 genomes]
rs11740871	1.00[CEU][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11741789	0.83[ASN][1000 genomes]
rs11742773	0.80[ASN][1000 genomes]
rs11746069	0.91[CEU][hapmap]
rs11746611	0.83[CEU][hapmap]
rs11749137	0.80[ASN][1000 genomes]
rs1350097	0.80[ASN][1000 genomes]
rs1447453	0.83[ASN][1000 genomes]
rs1531103	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16872333	0.83[ASN][1000 genomes]
rs16872347	0.83[ASN][1000 genomes]
rs16872364	0.83[ASN][1000 genomes]
rs16878945	0.86[AFR][1000 genomes]
rs17670701	1.00[CEU][hapmap];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17670867	1.00[CEU][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17670897	1.00[CEU][hapmap];0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17670975	1.00[CEU][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17671140	0.89[CEU][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17738111	1.00[CEU][hapmap];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17738266	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17738565	1.00[CEU][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17738645	1.00[CEU][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17738674	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17852781	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1812122	0.81[ASN][1000 genomes]
rs1993370	0.83[ASN][1000 genomes]
rs1993372	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2044410	0.83[ASN][1000 genomes]
rs2061162	0.83[ASN][1000 genomes]
rs2084116	0.80[ASN][1000 genomes]
rs2084118	0.80[ASN][1000 genomes]
rs2084119	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2100033	0.80[ASN][1000 genomes]
rs3932895	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3968877	0.81[CEU][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4594835	0.83[ASN][1000 genomes]
rs56068548	0.83[ASN][1000 genomes]
rs56202905	0.83[ASN][1000 genomes]
rs58184895	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61093699	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62366366	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62366371	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62366373	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62366406	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62366413	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62366414	0.80[ASN][1000 genomes]
rs62366415	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62366416	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62366418	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62366419	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62366420	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62366421	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62366423	0.83[ASN][1000 genomes]
rs62366424	0.83[ASN][1000 genomes]
rs62366426	0.83[ASN][1000 genomes]
rs62366450	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62366453	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62366454	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62366455	0.83[ASN][1000 genomes]
rs62366456	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62366457	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62366458	0.83[ASN][1000 genomes]
rs62366459	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62367765	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62367766	0.83[ASN][1000 genomes]
rs62367767	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6453086	0.80[ASN][1000 genomes]
rs6873067	0.83[ASN][1000 genomes]
rs6874094	0.80[ASN][1000 genomes]
rs6877116	0.81[ASN][1000 genomes]
rs6877442	0.83[ASN][1000 genomes]
rs6882499	0.80[ASN][1000 genomes]
rs6883061	0.80[ASN][1000 genomes]
rs6884843	0.83[ASN][1000 genomes]
rs6885675	0.80[ASN][1000 genomes]
rs6890815	0.80[ASN][1000 genomes]
rs6897698	0.83[ASN][1000 genomes]
rs6897904	0.83[ASN][1000 genomes]
rs72764640	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72764681	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7717223	0.83[ASN][1000 genomes]
rs7724292	0.83[ASN][1000 genomes]
rs7728889	0.83[ASN][1000 genomes]
rs820828	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs820830	0.90[CEU][hapmap]
rs820834	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs9686657	0.80[ASN][1000 genomes]

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74064400-74134600	Weak transcription	Fetal Brain Male	brain
2	chr5:74069000-74153000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:74074800-74143400	Weak transcription	Primary B cells from cord blood	blood
4	chr5:74095800-74146000	Weak transcription	Primary hematopoietic stem cells	blood
5	chr5:74096000-74137200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr5:74096000-74137200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr5:74097400-74147400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr5:74101200-74136400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr5:74112800-74144400	Weak transcription	A549	lung
10	chr5:74112800-74144800	Weak transcription	Brain Anterior Caudate	brain
11	chr5:74115200-74137400	Weak transcription	Ovary	ovary
12	chr5:74116200-74146000	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr5:74118400-74139800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr5:74118800-74139600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr5:74123600-74134600	Weak transcription	Primary B cells from peripheral blood	blood
16	chr5:74127000-74134400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr5:74127400-74148000	Weak transcription	Brain Angular Gyrus	brain
18	chr5:74128600-74134400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr5:74128600-74135600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr5:74128800-74135600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr5:74129600-74134800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr5:74129600-74135200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr5:74129600-74137600	Strong transcription	HUES64 Cell Line	embryonic stem cell
24	chr5:74129800-74136000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr5:74130400-74137800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr5:74130600-74135400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
27	chr5:74130600-74136000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
28	chr5:74130600-74147000	Weak transcription	HMEC	breast
29	chr5:74130800-74136000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
30	chr5:74130800-74143800	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr5:74131000-74135600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr5:74131200-74136000	Strong transcription	HUES6 Cell Line	embryonic stem cell
33	chr5:74131400-74135400	Strong transcription	H1 Cell Line	embryonic stem cell
34	chr5:74131400-74137800	Strong transcription	HUES48 Cell Line	embryonic stem cell
35	chr5:74131400-74140000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr5:74131800-74135400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr5:74131800-74136200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr5:74132000-74136200	Strong transcription	HepG2	liver
39	chr5:74132400-74142600	Weak transcription	Primary T cells fromperipheralblood	blood
40	chr5:74132600-74146200	Weak transcription	NHEK	skin
41	chr5:74133200-74139600	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr5:74133800-74134800	Enhancers	Fetal Thymus	thymus
43	chr5:74133800-74135000	Strong transcription	Dnd41	blood
44	chr5:74134000-74134400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr5:74134000-74134800	Enhancers	Primary T helper cells fromperipheralblood	blood
46	chr5:74134000-74135000	Enhancers	Primary T cells from cord blood	blood
47	chr5:74134000-74135000	Enhancers	Primary T helper cells PMA-I stimulated	--
48	chr5:74134000-74135400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr5:74134200-74134600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
50	chr5:74134200-74134600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--

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