Variant report

Variant	rs62366459
Chromosome Location	chr5:74144569-74144570
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs10062244	0.81[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs11556477	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11739122	0.80[ASN][1000 genomes]
rs11740871	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11741789	0.83[ASN][1000 genomes]
rs11742773	0.80[ASN][1000 genomes]
rs11749137	0.80[ASN][1000 genomes]
rs1350097	0.80[ASN][1000 genomes]
rs1447453	0.83[ASN][1000 genomes]
rs1531103	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16872333	0.83[ASN][1000 genomes]
rs16872347	0.83[ASN][1000 genomes]
rs16872364	0.83[ASN][1000 genomes]
rs16878945	0.88[AFR][1000 genomes]
rs17670701	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17670867	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17670897	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17670975	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17671140	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17738111	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17738266	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17738565	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17738645	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17738674	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17852781	0.81[ASN][1000 genomes]
rs1812122	0.81[ASN][1000 genomes]
rs1992712	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1993370	0.83[ASN][1000 genomes]
rs1993372	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2044410	0.83[ASN][1000 genomes]
rs2061162	0.83[ASN][1000 genomes]
rs2084116	0.80[ASN][1000 genomes]
rs2084118	0.80[ASN][1000 genomes]
rs2084119	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2100033	0.80[ASN][1000 genomes]
rs3932895	0.84[ASN][1000 genomes]
rs3968877	0.84[ASN][1000 genomes]
rs4594835	0.83[ASN][1000 genomes]
rs56068548	0.83[ASN][1000 genomes]
rs56202905	0.83[ASN][1000 genomes]
rs58184895	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61093699	0.81[ASN][1000 genomes]
rs62366366	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62366371	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62366373	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62366406	0.81[ASN][1000 genomes]
rs62366413	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62366414	0.80[ASN][1000 genomes]
rs62366415	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62366416	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62366418	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62366419	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62366420	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62366421	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62366423	0.83[ASN][1000 genomes]
rs62366424	0.83[ASN][1000 genomes]
rs62366426	0.83[ASN][1000 genomes]
rs62366450	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62366453	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62366454	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62366455	0.83[ASN][1000 genomes]
rs62366456	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62366457	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62366458	0.83[ASN][1000 genomes]
rs62367765	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62367766	0.83[ASN][1000 genomes]
rs62367767	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6453086	0.80[ASN][1000 genomes]
rs6873067	0.83[ASN][1000 genomes]
rs6874094	0.80[ASN][1000 genomes]
rs6877116	0.81[ASN][1000 genomes]
rs6877442	0.83[ASN][1000 genomes]
rs6882499	0.80[ASN][1000 genomes]
rs6883061	0.80[ASN][1000 genomes]
rs6884843	0.83[ASN][1000 genomes]
rs6885675	0.80[ASN][1000 genomes]
rs6890815	0.80[ASN][1000 genomes]
rs6897698	0.83[ASN][1000 genomes]
rs6897904	0.83[ASN][1000 genomes]
rs72764640	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72764681	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7717223	0.83[ASN][1000 genomes]
rs7724292	0.83[ASN][1000 genomes]
rs7728889	0.83[ASN][1000 genomes]
rs820828	0.81[EUR][1000 genomes]
rs820834	0.81[EUR][1000 genomes]
rs9686657	0.80[ASN][1000 genomes]

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74069000-74153000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:74095800-74146000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr5:74097400-74147400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr5:74112800-74144800	Weak transcription	Brain Anterior Caudate	brain
5	chr5:74116200-74146000	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr5:74127400-74148000	Weak transcription	Brain Angular Gyrus	brain
7	chr5:74130600-74147000	Weak transcription	HMEC	breast
8	chr5:74132600-74146200	Weak transcription	NHEK	skin
9	chr5:74134800-74144600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr5:74134800-74145000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr5:74134800-74146200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr5:74135000-74146600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr5:74135000-74147000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr5:74135200-74144600	Weak transcription	Brain Hippocampus Middle	brain
15	chr5:74135200-74147400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr5:74135400-74146800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr5:74135400-74146800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr5:74135400-74147000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr5:74135600-74145200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr5:74135600-74145800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr5:74138400-74146200	Enhancers	HepG2	liver
22	chr5:74140200-74144800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr5:74140200-74146800	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr5:74140200-74157800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr5:74140600-74160000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr5:74141000-74144600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr5:74141800-74145000	Weak transcription	Brain Cingulate Gyrus	brain
28	chr5:74142800-74151000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr5:74143000-74147400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr5:74143200-74147400	Weak transcription	NHDF-Ad	bronchial
31	chr5:74143600-74146000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr5:74143600-74149200	Enhancers	iPS-18 Cell Line	embryonic stem cell
33	chr5:74143800-74146200	Enhancers	HUES64 Cell Line	embryonic stem cell
34	chr5:74143800-74146400	Enhancers	Pancreatic Islets	Pancreatic Islet
35	chr5:74144200-74146200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
36	chr5:74144400-74144600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr5:74144400-74144600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
38	chr5:74144400-74144800	Enhancers	A549	lung
39	chr5:74144400-74145000	Enhancers	H1 Cell Line	embryonic stem cell
40	chr5:74144400-74145000	Enhancers	Fetal Kidney	kidney
41	chr5:74144400-74146200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr5:74144400-74146200	Enhancers	iPS-15b Cell Line	embryonic stem cell
43	chr5:74144400-74147000	Enhancers	HUES48 Cell Line	embryonic stem cell
44	chr5:74144400-74147400	Enhancers	HUES6 Cell Line	embryonic stem cell
45	chr5:74144400-74147800	Enhancers	Brain Substantia Nigra	brain
46	chr5:74144400-74149400	Enhancers	ES-I3 Cell Line	embryonic stem cell

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