Variant report

Variant	rs62366413
Chromosome Location	chr5:74067727-74067728
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr5:74067705-74067988	HepG2	liver:	n/a	n/a
2	POLR2A	chr5:74067611-74069007	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:74062619..74065180-chr5:74065672..74068766,3	K562	blood:
2	chr5:74065827..74070020-chr5:74073603..74077107,4	MCF-7	breast:

Variant related genes	Relation type
GFM2	TF binding region
ENSG00000164346	Chromatin interaction
ENSG00000164347	Chromatin interaction
ENSG00000199645	Chromatin interaction

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs10062244	0.96[ASN][1000 genomes]
rs10515189	0.82[ASN][1000 genomes]
rs11556477	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11739122	0.83[ASN][1000 genomes]
rs11740871	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11741464	0.81[ASN][1000 genomes]
rs11741789	0.80[ASN][1000 genomes]
rs11742773	0.83[ASN][1000 genomes]
rs11746611	0.81[ASN][1000 genomes]
rs11749137	0.83[ASN][1000 genomes]
rs1350097	0.83[ASN][1000 genomes]
rs1447453	0.80[ASN][1000 genomes]
rs1531103	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16872333	0.80[ASN][1000 genomes]
rs16872347	0.80[ASN][1000 genomes]
rs16872364	0.80[ASN][1000 genomes]
rs17670701	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17670867	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17670897	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17670975	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17671140	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17738111	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17738266	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17738565	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17738645	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17738674	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17852781	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1812122	0.84[ASN][1000 genomes]
rs1992712	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1993370	0.80[ASN][1000 genomes]
rs1993372	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2044410	0.80[ASN][1000 genomes]
rs2061162	0.80[ASN][1000 genomes]
rs2084116	0.83[ASN][1000 genomes]
rs2084118	0.83[ASN][1000 genomes]
rs2084119	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2100033	0.83[ASN][1000 genomes]
rs3733794	0.81[ASN][1000 genomes]
rs3932895	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3968877	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4594835	0.80[ASN][1000 genomes]
rs56068548	0.80[ASN][1000 genomes]
rs56202905	0.80[ASN][1000 genomes]
rs58184895	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61093699	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62366366	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62366371	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62366373	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62366375	0.81[ASN][1000 genomes]
rs62366376	0.81[ASN][1000 genomes]
rs62366406	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62366414	0.83[ASN][1000 genomes]
rs62366415	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62366416	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62366418	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62366419	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62366420	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62366421	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62366423	0.80[ASN][1000 genomes]
rs62366424	0.80[ASN][1000 genomes]
rs62366426	0.80[ASN][1000 genomes]
rs62366450	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62366453	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62366454	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62366455	0.80[ASN][1000 genomes]
rs62366456	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62366457	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62366458	0.80[ASN][1000 genomes]
rs62366459	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62367765	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62367766	0.80[ASN][1000 genomes]
rs62367767	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6453086	0.83[ASN][1000 genomes]
rs6873067	0.80[ASN][1000 genomes]
rs6874094	0.83[ASN][1000 genomes]
rs6877442	0.80[ASN][1000 genomes]
rs6882499	0.83[ASN][1000 genomes]
rs6883061	0.83[ASN][1000 genomes]
rs6884843	0.80[ASN][1000 genomes]
rs6885675	0.83[ASN][1000 genomes]
rs6890815	0.83[ASN][1000 genomes]
rs6897698	0.80[ASN][1000 genomes]
rs6897904	0.80[ASN][1000 genomes]
rs72764640	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72764681	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7717223	0.80[ASN][1000 genomes]
rs7724292	0.80[ASN][1000 genomes]
rs7728889	0.80[ASN][1000 genomes]
rs820828	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs820834	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9686657	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv598653	chr5:73992881-74095542	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74063800-74069200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:74064000-74067800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr5:74064000-74068000	Weak transcription	Ovary	ovary
4	chr5:74064000-74068200	Weak transcription	Lung	lung
5	chr5:74064000-74070200	Weak transcription	Aorta	Aorta
6	chr5:74064000-74071000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr5:74064000-74076000	Weak transcription	Esophagus	oesophagus
8	chr5:74064000-74077200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr5:74064000-74112400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr5:74064200-74067800	Weak transcription	Psoas Muscle	Psoas
11	chr5:74064200-74068000	Weak transcription	Spleen	Spleen
12	chr5:74064200-74068200	Weak transcription	Primary B cells from cord blood	blood
13	chr5:74064200-74068200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr5:74064200-74068400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr5:74064200-74068400	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr5:74064200-74068400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr5:74064200-74068600	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr5:74064200-74069000	Weak transcription	Thymus	Thymus
19	chr5:74064200-74070600	Weak transcription	Pancreas	Pancrea
20	chr5:74064200-74073000	Weak transcription	Gastric	stomach
21	chr5:74064200-74073800	Weak transcription	Small Intestine	intestine
22	chr5:74064200-74076000	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr5:74064200-74086000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr5:74064200-74102000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr5:74064400-74067800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr5:74064400-74068200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr5:74064400-74068400	Weak transcription	Colon Smooth Muscle	Colon
28	chr5:74064400-74068400	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr5:74064400-74068400	Weak transcription	NHLF	lung
30	chr5:74064400-74068600	Weak transcription	Primary hematopoietic stem cells	blood
31	chr5:74064400-74068600	Weak transcription	Brain Hippocampus Middle	brain
32	chr5:74064400-74073800	Weak transcription	Stomach Mucosa	stomach
33	chr5:74064400-74076600	Weak transcription	Rectal Smooth Muscle	rectum
34	chr5:74064400-74079600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr5:74064400-74086600	Weak transcription	Fetal Heart	heart
36	chr5:74064400-74134600	Weak transcription	Fetal Brain Male	brain
37	chr5:74064600-74068000	Weak transcription	Brain Cingulate Gyrus	brain
38	chr5:74064600-74068400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr5:74064600-74068400	Weak transcription	NHEK	skin
40	chr5:74064600-74074400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr5:74064600-74079400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr5:74064600-74079600	Strong transcription	HUES64 Cell Line	embryonic stem cell
43	chr5:74064800-74067800	Strong transcription	Liver	Liver
44	chr5:74064800-74070000	Strong transcription	Dnd41	blood
45	chr5:74064800-74070000	Strong transcription	HMEC	breast
46	chr5:74064800-74072400	Strong transcription	Cortex derived primary cultured neurospheres	brain
47	chr5:74064800-74074000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
48	chr5:74064800-74074400	Strong transcription	Osteobl	bone
49	chr5:74064800-74074600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr5:74064800-74074600	Strong transcription	Primary T helper cells PMA-I stimulated	--

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