Variant report

Variant	rs11821702
Chromosome Location	chr11:106850097-106850098
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11211984	0.80[AMR][1000 genomes]
rs11211990	0.88[AMR][1000 genomes]
rs11211992	0.90[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11211998	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11211999	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11212000	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11212002	0.81[AMR][1000 genomes]
rs12574600	0.80[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12575602	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12576139	0.91[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12576946	0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1378531	0.81[AMR][1000 genomes]
rs17106266	0.90[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs17106274	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs17106277	0.90[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs17106280	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs17106282	0.90[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2124303	0.81[AMR][1000 genomes]
rs4362108	0.90[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4753783	0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4754176	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6588940	0.80[ASN][1000 genomes]
rs73553883	0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7934709	0.80[ASN][1000 genomes]
rs982443	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531938	chr11:106760733-107156814	Enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106828400-106857400	Weak transcription	Fetal Muscle Trunk	muscle
2	chr11:106830800-106853600	Weak transcription	Fetal Muscle Leg	muscle
3	chr11:106832000-106851000	Weak transcription	Pancreas	Pancrea
4	chr11:106833400-106857800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr11:106840600-106853600	Weak transcription	Brain Anterior Caudate	brain
6	chr11:106845600-106853600	Weak transcription	Brain Cingulate Gyrus	brain
7	chr11:106847800-106851000	Weak transcription	Ovary	ovary
8	chr11:106848000-106850600	Weak transcription	Fetal Heart	heart
9	chr11:106848600-106854000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr11:106849400-106850400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr11:106849800-106850400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:106849800-106851400	Weak transcription	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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