Variant report

Variant	rs12574600
Chromosome Location	chr11:106840856-106840857
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10502082	1.00[EUR][1000 genomes]
rs10890625	0.93[EUR][1000 genomes]
rs11211978	0.80[EUR][1000 genomes]
rs11211984	0.93[EUR][1000 genomes]
rs11211985	0.93[EUR][1000 genomes]
rs11211990	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11211992	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11211998	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11211999	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11212000	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11212002	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11821702	0.80[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12223160	0.80[EUR][1000 genomes]
rs12416852	0.80[EUR][1000 genomes]
rs12421647	0.80[EUR][1000 genomes]
rs12575602	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12576139	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12576946	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1378531	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17106266	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17106274	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17106277	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17106280	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17106282	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2124303	0.82[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2280620	0.89[JPT][hapmap];0.88[EUR][1000 genomes]
rs4362108	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4753783	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4754176	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6588940	0.81[ASN][1000 genomes]
rs73553883	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7934709	0.81[ASN][1000 genomes]
rs982443	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531938	chr11:106760733-107156814	Enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106828400-106857400	Weak transcription	Fetal Muscle Trunk	muscle
2	chr11:106830400-106841400	Enhancers	Fetal Heart	heart
3	chr11:106830800-106853600	Weak transcription	Fetal Muscle Leg	muscle
4	chr11:106832000-106851000	Weak transcription	Pancreas	Pancrea
5	chr11:106833400-106857800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr11:106838200-106842600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr11:106838200-106844200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr11:106839600-106841200	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr11:106839600-106841200	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr11:106839800-106841000	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr11:106839800-106841000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr11:106840000-106841000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr11:106840000-106841000	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr11:106840000-106841000	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr11:106840000-106841000	Enhancers	Fetal Lung	lung
16	chr11:106840400-106841000	Enhancers	H1 Cell Line	embryonic stem cell
17	chr11:106840600-106841000	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr11:106840600-106853600	Weak transcription	Brain Anterior Caudate	brain
19	chr11:106840800-106841200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr11:106840800-106845400	Weak transcription	Brain Angular Gyrus	brain
21	chr11:106840800-106845600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr11:106840800-106846200	Weak transcription	Ovary	ovary

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