Variant report

Variant	rs12223160
Chromosome Location	chr11:106791165-106791166
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10502082	0.80[EUR][1000 genomes]
rs10890625	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11211978	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11211984	0.86[EUR][1000 genomes]
rs11211985	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11211990	0.80[EUR][1000 genomes]
rs11211992	0.80[EUR][1000 genomes]
rs11211998	0.80[AMR][1000 genomes]
rs11211999	0.80[EUR][1000 genomes]
rs11212000	0.80[EUR][1000 genomes]
rs11212002	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12416852	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12421647	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12574600	0.80[EUR][1000 genomes]
rs12575602	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12576139	0.80[EUR][1000 genomes]
rs12576946	0.80[EUR][1000 genomes]
rs1378531	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17106116	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs17106130	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs17106266	0.80[EUR][1000 genomes]
rs17106274	0.80[EUR][1000 genomes]
rs17106277	0.80[EUR][1000 genomes]
rs17106280	0.80[EUR][1000 genomes]
rs17106282	0.80[EUR][1000 genomes]
rs2124303	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4362108	0.80[EUR][1000 genomes]
rs4753783	0.80[EUR][1000 genomes]
rs4754176	0.80[EUR][1000 genomes]
rs73553883	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898362	chr11:106715879-106809457	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv556231	chr11:106737224-106815963	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv474	chr11:106757020-106795146	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv531938	chr11:106760733-107156814	Enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv556237	chr11:106785139-106795127	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
6	nsv983210	chr11:106786319-106793649	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
7	nsv556247	chr11:106786428-106795127	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
8	esv1818906	chr11:106786428-106831384	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
9	nsv556255	chr11:106786623-106795127	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
10	nsv556263	chr11:106786800-106795127	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
11	nsv556268	chr11:106786992-106795127	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
12	esv3474953	chr11:106787042-106791340	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
13	esv3474964	chr11:106787042-106791340	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106786200-106806800	Weak transcription	Fetal Lung	lung

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