Variant report

Variant	rs11211985
Chromosome Location	chr11:106821275-106821276
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10502082	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10890625	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11211978	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11211984	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11211990	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11211992	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11211998	0.91[AMR][1000 genomes]
rs11211999	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11212000	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11212002	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12223160	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12416852	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12421647	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12574600	0.93[EUR][1000 genomes]
rs12575602	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12576139	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12576946	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1378531	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17106116	1.00[AFR][1000 genomes]
rs17106130	1.00[AFR][1000 genomes]
rs17106266	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17106274	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17106277	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17106280	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17106282	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2124303	0.88[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2280620	0.85[JPT][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4362108	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4753783	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4754176	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73553883	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531938	chr11:106760733-107156814	Enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv1818906	chr11:106786428-106831384	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106807400-106826600	Weak transcription	Fetal Lung	lung
2	chr11:106808000-106827800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr11:106809000-106830400	Weak transcription	Fetal Muscle Leg	muscle
4	chr11:106819800-106821400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr11:106820000-106821400	Enhancers	NHEK	skin
6	chr11:106820000-106822200	Enhancers	Fetal Heart	heart
7	chr11:106820200-106821400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr11:106820400-106821400	Enhancers	HMEC	breast
9	chr11:106820800-106821400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr11:106821000-106821400	Enhancers	Left Ventricle	heart
11	chr11:106821000-106821400	Enhancers	Dnd41	blood
12	chr11:106821200-106821400	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr11:106821200-106827600	Weak transcription	Fetal Muscle Trunk	muscle

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