Variant report

Variant	rs12576139
Chromosome Location	chr11:106838193-106838194
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10502082	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10890625	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11211978	0.80[EUR][1000 genomes]
rs11211984	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11211985	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11211990	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11211992	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11211998	0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11211999	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11212000	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11212002	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11821702	0.91[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12223160	0.80[EUR][1000 genomes]
rs12416852	0.80[EUR][1000 genomes]
rs12421647	0.80[EUR][1000 genomes]
rs12574600	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12575602	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12576946	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1378531	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17106266	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17106274	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17106277	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17106280	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17106282	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2124303	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2280620	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4362108	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4753783	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4754176	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6588940	0.97[ASN][1000 genomes]
rs73553883	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7934709	0.97[ASN][1000 genomes]
rs982443	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531938	chr11:106760733-107156814	Enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106828400-106840200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:106828400-106857400	Weak transcription	Fetal Muscle Trunk	muscle
3	chr11:106830400-106841400	Enhancers	Fetal Heart	heart
4	chr11:106830800-106853600	Weak transcription	Fetal Muscle Leg	muscle
5	chr11:106832000-106840400	Weak transcription	Ovary	ovary
6	chr11:106832000-106851000	Weak transcription	Pancreas	Pancrea
7	chr11:106832400-106839800	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr11:106832600-106839600	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr11:106832600-106839600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr11:106832600-106839600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr11:106832600-106839800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr11:106832600-106840200	Weak transcription	Brain Anterior Caudate	brain
13	chr11:106832800-106840000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr11:106833400-106857800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr11:106835400-106840000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr11:106836600-106840200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr11:106836600-106840400	Weak transcription	NHDF-Ad	bronchial
18	chr11:106837400-106838200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr11:106837400-106838800	Enhancers	Fetal Lung	lung
20	chr11:106837600-106838200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr11:106837800-106838200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr11:106837800-106839000	Enhancers	Fetal Brain Male	brain
23	chr11:106838000-106838200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr11:106838000-106839200	Weak transcription	Brain Hippocampus Middle	brain

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