Variant report

Variant	rs11211999
Chromosome Location	chr11:106867274-106867275
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10502082	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10890625	0.93[EUR][1000 genomes]
rs11211978	0.80[EUR][1000 genomes]
rs11211984	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11211985	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11211990	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11211992	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11211998	0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11212000	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11212002	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11821702	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12223160	0.80[EUR][1000 genomes]
rs12416852	0.80[EUR][1000 genomes]
rs12421647	0.80[EUR][1000 genomes]
rs12574600	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12575602	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12576139	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12576946	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1378531	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17106266	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17106274	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17106277	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17106280	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17106282	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2124303	0.88[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2280620	0.90[JPT][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4362108	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4753783	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4754176	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73553883	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs982443	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531938	chr11:106760733-107156814	Enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106855000-106868400	Weak transcription	Brain Angular Gyrus	brain
2	chr11:106861200-106869400	Weak transcription	NHLF	lung
3	chr11:106861600-106868000	Weak transcription	Fetal Heart	heart
4	chr11:106861600-106886200	Weak transcription	Fetal Brain Male	brain
5	chr11:106862200-106868800	Weak transcription	Fetal Muscle Leg	muscle
6	chr11:106866200-106867400	Weak transcription	NHDF-Ad	bronchial
7	chr11:106866400-106868200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr11:106866800-106869000	Enhancers	Brain Cingulate Gyrus	brain
9	chr11:106866800-106869000	Enhancers	Fetal Lung	lung
10	chr11:106866800-106869400	Enhancers	Brain Hippocampus Middle	brain
11	chr11:106866800-106870600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr11:106867200-106867600	Enhancers	Brain Substantia Nigra	brain
13	chr11:106867200-106868600	Enhancers	Brain Anterior Caudate	brain

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