Variant report

Variant	rs2124303
Chromosome Location	chr11:106898175-106898176
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:106888538..106891108-chr11:106896983..106899204,2	K562	blood:
2	chr11:106897061..106899298-chr11:106900848..106903030,2	K562	blood:
3	chr11:106897971..106898911-chr8:146131253..146132091,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000152402	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10502082	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10890625	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11211978	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11211984	0.93[EUR][1000 genomes]
rs11211985	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11211990	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11211992	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11211998	0.96[AMR][1000 genomes]
rs11211999	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11212000	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11212002	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11821702	0.81[AMR][1000 genomes]
rs12223160	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12416852	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12421647	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12574600	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12575602	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12576139	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12576946	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1378531	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17106266	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17106274	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17106277	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17106280	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17106282	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2280620	0.94[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4362108	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4753783	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4754176	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73553883	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531938	chr11:106760733-107156814	Enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv527555	chr11:106895032-106971481	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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