Variant report

Variant	rs17106277
Chromosome Location	chr11:106857509-106857510
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10502082	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10890625	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11211978	0.80[EUR][1000 genomes]
rs11211984	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11211985	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11211990	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11211992	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11211998	0.91[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11211999	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11212000	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11212002	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11821702	0.90[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12223160	0.80[EUR][1000 genomes]
rs12416852	0.80[EUR][1000 genomes]
rs12421647	0.80[EUR][1000 genomes]
rs12574600	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12575602	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12576139	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12576946	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1378531	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17106266	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17106274	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17106280	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17106282	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2124303	0.84[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2280620	0.90[JPT][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4362108	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4753783	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4754176	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73553883	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs982443	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531938	chr11:106760733-107156814	Enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106833400-106857800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr11:106850800-106858600	Weak transcription	Fetal Stomach	stomach
3	chr11:106851200-106858800	Weak transcription	Ovary	ovary
4	chr11:106851200-106859400	Weak transcription	Pancreas	Pancrea
5	chr11:106854000-106857600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr11:106854400-106859400	Weak transcription	Fetal Muscle Leg	muscle
7	chr11:106855000-106859600	Weak transcription	Brain Cingulate Gyrus	brain
8	chr11:106855000-106861000	Weak transcription	Fetal Brain Male	brain
9	chr11:106855000-106868400	Weak transcription	Brain Angular Gyrus	brain
10	chr11:106855200-106857600	Weak transcription	Fetal Lung	lung
11	chr11:106855200-106858600	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr11:106855800-106858800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr11:106856200-106859400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr11:106856200-106860000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr11:106856400-106861400	Enhancers	NHDF-Ad	bronchial
16	chr11:106856800-106858800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr11:106857000-106860000	Enhancers	Muscle Satellite Cultured Cells	--
18	chr11:106857200-106858400	Weak transcription	NHLF	lung
19	chr11:106857200-106858600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr11:106857400-106857600	Enhancers	HSMM	muscle
21	chr11:106857400-106858200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr11:106857400-106858200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr11:106857400-106858200	Enhancers	Placenta	Placenta
24	chr11:106857400-106858400	Enhancers	Fetal Muscle Trunk	muscle

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