Variant report

Variant	rs10502082
Chromosome Location	chr11:106915034-106915035
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:106906032..106908354-chr11:106914189..106916084,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10890625	0.93[EUR][1000 genomes]
rs11211978	0.80[EUR][1000 genomes]
rs11211984	0.93[EUR][1000 genomes]
rs11211985	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11211990	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11211992	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11211998	0.92[AMR][1000 genomes]
rs11211999	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11212000	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11212002	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12223160	0.80[EUR][1000 genomes]
rs12416852	0.80[EUR][1000 genomes]
rs12421647	0.80[EUR][1000 genomes]
rs12574600	1.00[EUR][1000 genomes]
rs12575602	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12576139	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12576946	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1378531	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17106266	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17106274	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17106277	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17106280	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17106282	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2124303	0.89[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2280620	0.91[JPT][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4362108	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4753783	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4754176	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73553883	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531938	chr11:106760733-107156814	Enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv527555	chr11:106895032-106971481	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106913400-106915200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr11:106913400-106915200	Enhancers	Fetal Lung	lung
3	chr11:106913400-106915400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr11:106913400-106915800	Enhancers	HSMM	muscle
5	chr11:106913600-106915200	Enhancers	HMEC	breast
6	chr11:106913600-106915200	Enhancers	NHDF-Ad	bronchial
7	chr11:106913600-106915400	Enhancers	Muscle Satellite Cultured Cells	--
8	chr11:106913600-106915400	Enhancers	Osteobl	bone
9	chr11:106914200-106915400	Enhancers	HSMMtube	muscle
10	chr11:106914400-106915200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr11:106914600-106915200	Weak transcription	GM12878-XiMat	blood
12	chr11:106914800-106915400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr11:106915000-106915600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr11:106915000-106916000	Enhancers	NH-A	brain

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