Variant report

Variant	rs17106282
Chromosome Location	chr11:106860540-106860541
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10502082	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10890625	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11211978	0.80[EUR][1000 genomes]
rs11211984	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11211985	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11211990	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11211992	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11211998	0.91[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11211999	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11212000	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11212002	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11821702	0.90[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12223160	0.80[EUR][1000 genomes]
rs12416852	0.80[EUR][1000 genomes]
rs12421647	0.80[EUR][1000 genomes]
rs12574600	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12575602	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12576139	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12576946	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1378531	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17106266	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17106274	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17106277	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17106280	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2124303	0.84[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2280620	0.90[JPT][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4362108	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4753783	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4754176	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73553883	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs982443	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531938	chr11:106760733-107156814	Enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106855000-106861000	Weak transcription	Fetal Brain Male	brain
2	chr11:106855000-106868400	Weak transcription	Brain Angular Gyrus	brain
3	chr11:106856400-106861400	Enhancers	NHDF-Ad	bronchial
4	chr11:106857600-106861600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr11:106857800-106861400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr11:106858200-106860800	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr11:106858200-106861000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr11:106858200-106861000	Weak transcription	Placenta	Placenta
9	chr11:106858200-106861600	Enhancers	Fetal Heart	heart
10	chr11:106858400-106861000	Weak transcription	Fetal Muscle Trunk	muscle
11	chr11:106859000-106860800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr11:106859600-106861000	Enhancers	Fetal Lung	lung
13	chr11:106859800-106860600	Weak transcription	Fetal Kidney	kidney
14	chr11:106859800-106860800	Weak transcription	Esophagus	oesophagus
15	chr11:106859800-106860800	Weak transcription	Fetal Muscle Leg	muscle
16	chr11:106859800-106860800	Weak transcription	NHLF	lung
17	chr11:106859800-106861000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr11:106859800-106861000	Weak transcription	Pancreas	Pancrea
19	chr11:106860000-106861000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr11:106860000-106861000	Weak transcription	Ovary	ovary
21	chr11:106860000-106861000	Weak transcription	Right Atrium	heart
22	chr11:106860000-106861000	Weak transcription	HSMMtube	muscle
23	chr11:106860000-106861200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr11:106860400-106860800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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