Variant report

Variant	rs2280620
Chromosome Location	chr11:106892204-106892205
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	REST	chr11:106891989-106892829	H1-neurons	neurons:	n/a	n/a
2	REST	chr11:106892168-106892744	H1-neurons	neurons:	n/a	n/a

Variant related genes	Relation type
GUCY1A2	TF binding region

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10502082	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10890625	0.82[EUR][1000 genomes]
rs11211984	0.82[EUR][1000 genomes]
rs11211985	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11211990	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11211992	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11211998	0.94[AMR][1000 genomes]
rs11211999	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11212000	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11212002	0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12574600	0.88[EUR][1000 genomes]
rs12575602	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12576139	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12576946	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1378531	0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17106266	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17106274	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17106277	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17106280	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17106282	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2124303	0.94[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2445114	0.81[JPT][hapmap]
rs2462410	0.81[JPT][hapmap]
rs4362108	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4753783	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4754176	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73553883	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531938	chr11:106760733-107156814	Enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106890600-106893000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:106890600-106894000	Enhancers	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links