Variant report

Variant	rs17106280
Chromosome Location	chr11:106859670-106859671
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10502082	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10890625	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11211978	0.80[EUR][1000 genomes]
rs11211984	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11211985	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11211990	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11211992	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11211998	0.94[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11211999	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11212000	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11212002	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11821702	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12223160	0.80[EUR][1000 genomes]
rs12416852	0.80[EUR][1000 genomes]
rs12421647	0.80[EUR][1000 genomes]
rs12574600	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12575602	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12576139	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12576946	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1378531	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17106266	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17106274	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17106277	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17106282	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2124303	0.88[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2280620	0.90[JPT][hapmap];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4362108	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4753783	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4754176	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73553883	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs982443	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531938	chr11:106760733-107156814	Enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106855000-106861000	Weak transcription	Fetal Brain Male	brain
2	chr11:106855000-106868400	Weak transcription	Brain Angular Gyrus	brain
3	chr11:106856200-106860000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr11:106856400-106861400	Enhancers	NHDF-Ad	bronchial
5	chr11:106857000-106860000	Enhancers	Muscle Satellite Cultured Cells	--
6	chr11:106857600-106861600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr11:106857800-106861400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr11:106858200-106860800	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr11:106858200-106861000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr11:106858200-106861000	Weak transcription	Placenta	Placenta
11	chr11:106858200-106861600	Enhancers	Fetal Heart	heart
12	chr11:106858400-106859800	Enhancers	NHLF	lung
13	chr11:106858400-106861000	Weak transcription	Fetal Muscle Trunk	muscle
14	chr11:106858600-106860000	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr11:106858600-106860000	Enhancers	Dnd41	blood
16	chr11:106858600-106860000	Enhancers	NH-A	brain
17	chr11:106858800-106859800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr11:106858800-106860000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr11:106858800-106860000	Enhancers	Ovary	ovary
20	chr11:106858800-106860000	Enhancers	HSMMtube	muscle
21	chr11:106859000-106860800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr11:106859400-106859800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr11:106859400-106859800	Enhancers	Fetal Kidney	kidney
24	chr11:106859400-106859800	Enhancers	Fetal Muscle Leg	muscle
25	chr11:106859400-106859800	Enhancers	Pancreas	Pancrea
26	chr11:106859400-106860000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr11:106859400-106860000	Enhancers	Right Atrium	heart
28	chr11:106859600-106861000	Enhancers	Fetal Lung	lung

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