Variant report

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10502082	0.80[EUR][1000 genomes]
rs10890625	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11211978	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11211984	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11211985	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11211990	0.80[EUR][1000 genomes]
rs11211992	0.80[EUR][1000 genomes]
rs11211998	0.80[AMR][1000 genomes]
rs11211999	0.80[EUR][1000 genomes]
rs11212000	0.80[EUR][1000 genomes]
rs11212002	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12223160	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12421647	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12574600	0.80[EUR][1000 genomes]
rs12575602	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12576139	0.80[EUR][1000 genomes]
rs12576946	0.80[EUR][1000 genomes]
rs1378531	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17106116	0.87[AMR][1000 genomes]
rs17106130	0.87[AMR][1000 genomes]
rs17106266	0.80[EUR][1000 genomes]
rs17106274	0.80[EUR][1000 genomes]
rs17106277	0.80[EUR][1000 genomes]
rs17106280	0.80[EUR][1000 genomes]
rs17106282	0.80[EUR][1000 genomes]
rs2124303	0.84[JPT][hapmap];0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4362108	0.80[EUR][1000 genomes]
rs4753783	0.80[EUR][1000 genomes]
rs4754176	0.80[EUR][1000 genomes]
rs73553883	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898362	chr11:106715879-106809457	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv556231	chr11:106737224-106815963	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv531938	chr11:106760733-107156814	Enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv1818906	chr11:106786428-106831384	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106795000-106810600	Weak transcription	Fetal Brain Male	brain
2	chr11:106807000-106810600	Weak transcription	Fetal Heart	heart
3	chr11:106807400-106826600	Weak transcription	Fetal Lung	lung
4	chr11:106808000-106812400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr11:106808000-106827800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr11:106808400-106809800	Weak transcription	Brain Germinal Matrix	brain

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