Variant report
| Variant | rs12421647 |
|---|---|
| Chromosome Location | chr11:106774868-106774869 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr11:106770027..106773007-chr11:106773541..106775762,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs10502082 | 0.80[EUR][1000 genomes] |
| rs10890625 | 0.93[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs11211978 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs11211984 | 0.86[EUR][1000 genomes] |
| rs11211985 | 1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs11211990 | 0.80[EUR][1000 genomes] |
| rs11211992 | 0.80[EUR][1000 genomes] |
| rs11211998 | 0.80[AMR][1000 genomes] |
| rs11211999 | 0.80[EUR][1000 genomes] |
| rs11212000 | 0.80[EUR][1000 genomes] |
| rs11212002 | 0.80[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs12223160 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs12416852 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs12574600 | 0.80[EUR][1000 genomes] |
| rs12575602 | 0.82[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs12576139 | 0.80[EUR][1000 genomes] |
| rs12576946 | 0.80[EUR][1000 genomes] |
| rs1378531 | 0.80[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs17106116 | 1.00[AFR][1000 genomes];0.87[AMR][1000 genomes] |
| rs17106130 | 1.00[AFR][1000 genomes];0.87[AMR][1000 genomes] |
| rs17106266 | 0.80[EUR][1000 genomes] |
| rs17106274 | 0.80[EUR][1000 genomes] |
| rs17106277 | 0.80[EUR][1000 genomes] |
| rs17106280 | 0.80[EUR][1000 genomes] |
| rs17106282 | 0.80[EUR][1000 genomes] |
| rs2124303 | 0.80[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs4362108 | 0.80[EUR][1000 genomes] |
| rs4753783 | 0.80[EUR][1000 genomes] |
| rs4754176 | 0.80[EUR][1000 genomes] |
| rs73553883 | 0.80[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv898362 | chr11:106715879-106809457 | ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 2 | nsv556231 | chr11:106737224-106815963 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv474 | chr11:106757020-106795146 | ZNF genes & repeats Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv531938 | chr11:106760733-107156814 | Enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:106774000-106776800 | Enhancers | Fetal Heart | heart |
