The 2.0 version of rSNPBase

Variant report

Variant rs11878997
Chromosome Location chr19:19540743-19540744
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:111 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:19518600-19549800 Weak transcription Fetal Brain Female brain
2 chr19:19520800-19546800 Weak transcription Hela-S3 cervix
3 chr19:19521000-19545400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
4 chr19:19522000-19545000 Weak transcription Fetal Lung lung
5 chr19:19522200-19548600 Weak transcription iPS-18 Cell Line embryonic stem cell
6 chr19:19522200-19563400 Weak transcription Placenta Amnion Placenta Amnion
7 chr19:19528800-19544200 Weak transcription Fetal Heart heart
8 chr19:19530000-19545400 Weak transcription Colonic Mucosa Colon
9 chr19:19530200-19543400 Weak transcription Stomach Smooth Muscle stomach
10 chr19:19530200-19547400 Weak transcription Rectal Mucosa Donor 29 rectum
11 chr19:19531400-19541600 Enhancers Primary T helper 17 cells PMA-I stimulated --
12 chr19:19531400-19545000 Enhancers Primary T killer naive cells fromperipheralblood blood
13 chr19:19532200-19541400 Weak transcription Small Intestine intestine
14 chr19:19532400-19543400 Weak transcription Primary T cells from cord blood blood
15 chr19:19532400-19544400 Enhancers Primary T helper naive cells fromperipheralblood blood
16 chr19:19532400-19545000 Weak transcription Rectal Smooth Muscle rectum
17 chr19:19533200-19544000 Weak transcription Sigmoid Colon Sigmoid Colon
18 chr19:19533400-19543600 Weak transcription Ovary ovary
19 chr19:19534800-19543800 Weak transcription K562 blood
20 chr19:19534800-19548400 Weak transcription HSMM muscle
21 chr19:19535000-19544800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
22 chr19:19535000-19545000 Weak transcription Osteobl bone
23 chr19:19535400-19542200 Enhancers Primary T helper memory cells from peripheral blood 2 blood
24 chr19:19536200-19545200 Enhancers Skeletal Muscle Male skeletal muscle
25 chr19:19536800-19545000 Weak transcription Aorta Aorta
26 chr19:19536800-19545200 Weak transcription Brain Hippocampus Middle brain
27 chr19:19536800-19545400 Weak transcription Brain Cingulate Gyrus brain
28 chr19:19536800-19545400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
29 chr19:19537000-19544800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
30 chr19:19537000-19545000 Weak transcription Muscle Satellite Cultured Cells --
31 chr19:19537000-19546800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
32 chr19:19537000-19549000 Weak transcription Brain Germinal Matrix brain
33 chr19:19537200-19542000 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
34 chr19:19537200-19542000 Enhancers Primary T helper naive cells from peripheral blood blood
35 chr19:19537200-19549200 Weak transcription H1 Cell Line embryonic stem cell
36 chr19:19537400-19540800 Weak transcription Primary T regulatory cells fromperipheralblood blood
37 chr19:19537400-19541600 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
38 chr19:19537600-19542200 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
39 chr19:19537800-19544000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
40 chr19:19537800-19549800 Weak transcription A549 lung
41 chr19:19538000-19541400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
42 chr19:19538000-19542200 Strong transcription Dnd41 blood
43 chr19:19538000-19543400 Weak transcription Liver Liver
44 chr19:19538000-19544200 Weak transcription HUVEC blood vessel
45 chr19:19538000-19546800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
46 chr19:19538200-19543800 Weak transcription iPS-20b Cell Line embryonic stem cell
47 chr19:19538200-19546800 Weak transcription ES-I3 Cell Line embryonic stem cell
48 chr19:19538200-19554800 Weak transcription H9 Cell Line embryonic stem cell
49 chr19:19538400-19555000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
50 chr19:19538400-19555200 Weak transcription Primary hematopoietic stem cells blood

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Last update: Aug 31, 2015