The 2.0 version of rSNPBase

Variant report

Variant rs58210809
Chromosome Location chr19:19680238-19680239
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:75 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:19652000-19688400 Weak transcription Right Atrium heart
2 chr19:19652600-19686200 Weak transcription iPS-15b Cell Line embryonic stem cell
3 chr19:19659200-19686200 Weak transcription Fetal Brain Male brain
4 chr19:19665600-19682400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
5 chr19:19665600-19685600 Weak transcription Primary Natural Killer cells fromperipheralblood blood
6 chr19:19666800-19681000 Weak transcription Pancreas Pancrea
7 chr19:19669400-19683200 Strong transcription Fetal Stomach stomach
8 chr19:19669400-19683600 Weak transcription Sigmoid Colon Sigmoid Colon
9 chr19:19669600-19680800 Weak transcription Gastric stomach
10 chr19:19671000-19686200 Weak transcription HUES64 Cell Line embryonic stem cell
11 chr19:19671200-19681000 Weak transcription Lung lung
12 chr19:19671200-19681800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
13 chr19:19671200-19686400 Weak transcription ES-I3 Cell Line embryonic stem cell
14 chr19:19671200-19686400 Weak transcription HUES6 Cell Line embryonic stem cell
15 chr19:19671400-19681000 Weak transcription Primary T killer memory cells from peripheral blood blood
16 chr19:19671600-19681600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
17 chr19:19671600-19701800 Weak transcription Stomach Smooth Muscle stomach
18 chr19:19672000-19704800 Weak transcription Brain Angular Gyrus brain
19 chr19:19672200-19682000 Strong transcription Thymus Thymus
20 chr19:19672400-19681600 Strong transcription Cortex derived primary cultured neurospheres brain
21 chr19:19672600-19682400 Strong transcription Primary T helper 17 cells PMA-I stimulated --
22 chr19:19672800-19682000 Strong transcription Breast Myoepithelial Primary Cells Breast
23 chr19:19673000-19680800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
24 chr19:19673400-19682600 Weak transcription Brain Hippocampus Middle brain
25 chr19:19674200-19689200 Weak transcription Brain Substantia Nigra brain
26 chr19:19674200-19690600 Weak transcription Duodenum Mucosa Duodenum
27 chr19:19674200-19690800 Weak transcription Rectal Mucosa Donor 29 rectum
28 chr19:19674200-19691000 Weak transcription Rectal Mucosa Donor 31 rectum
29 chr19:19674200-19699800 Weak transcription Primary T killer naive cells fromperipheralblood blood
30 chr19:19674400-19690600 Weak transcription Stomach Mucosa stomach
31 chr19:19675000-19682200 Strong transcription Primary T regulatory cells fromperipheralblood blood
32 chr19:19675400-19681600 Strong transcription Primary T cells from cord blood blood
33 chr19:19675400-19681600 Strong transcription Brain Germinal Matrix brain
34 chr19:19675400-19682400 Strong transcription Primary mononuclear cells fromperipheralblood Blood
35 chr19:19675400-19682400 Strong transcription Fetal Brain Female brain
36 chr19:19675600-19682400 Weak transcription Adipose Nuclei Adipose
37 chr19:19676200-19701600 Weak transcription GM12878-XiMat blood
38 chr19:19677400-19681600 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
39 chr19:19677800-19681400 Strong transcription Fetal Lung lung
40 chr19:19677800-19681600 Strong transcription Dnd41 blood
41 chr19:19677800-19682000 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
42 chr19:19678000-19681200 Strong transcription Fetal Muscle Trunk muscle
43 chr19:19678000-19681800 Strong transcription Primary T cells fromperipheralblood blood
44 chr19:19678000-19681800 Strong transcription Primary T helper cells PMA-I stimulated --
45 chr19:19678000-19682000 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
46 chr19:19678000-19682000 Strong transcription Primary T helper cells fromperipheralblood blood
47 chr19:19678200-19681600 Strong transcription Brain Anterior Caudate brain
48 chr19:19678200-19682000 Strong transcription Primary T helper naive cells fromperipheralblood blood
49 chr19:19678400-19680800 Weak transcription Esophagus oesophagus
50 chr19:19678600-19680800 Weak transcription NHLF lung

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Last update: Aug 31, 2015