The 2.0 version of rSNPBase

Variant report

Variant rs11879483
Chromosome Location chr19:19553766-19553767
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:116 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:19522200-19563400 Weak transcription Placenta Amnion Placenta Amnion
2 chr19:19538200-19554800 Weak transcription H9 Cell Line embryonic stem cell
3 chr19:19538400-19555000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
4 chr19:19538400-19555200 Weak transcription Primary hematopoietic stem cells blood
5 chr19:19538400-19555800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
6 chr19:19538400-19556800 Weak transcription HUES48 Cell Line embryonic stem cell
7 chr19:19538400-19556800 Weak transcription HUES64 Cell Line embryonic stem cell
8 chr19:19539800-19555000 Weak transcription Stomach Mucosa stomach
9 chr19:19540200-19555400 Weak transcription iPS-15b Cell Line embryonic stem cell
10 chr19:19540200-19562600 Weak transcription Fetal Intestine Large intestine
11 chr19:19544200-19555800 Weak transcription iPS-20b Cell Line embryonic stem cell
12 chr19:19544400-19563400 Weak transcription Fetal Kidney kidney
13 chr19:19545400-19556000 Strong transcription Fetal Intestine Small intestine
14 chr19:19545400-19562200 Weak transcription Brain Angular Gyrus brain
15 chr19:19545600-19553800 Weak transcription Placenta Placenta
16 chr19:19545600-19554800 Weak transcription Rectal Mucosa Donor 31 rectum
17 chr19:19545600-19568600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
18 chr19:19545800-19554600 Weak transcription HUVEC blood vessel
19 chr19:19545800-19555200 Weak transcription Aorta Aorta
20 chr19:19545800-19555400 Weak transcription Osteobl bone
21 chr19:19545800-19558200 Weak transcription Fetal Lung lung
22 chr19:19545800-19558400 Weak transcription HSMMtube muscle
23 chr19:19545800-19563400 Weak transcription Rectal Smooth Muscle rectum
24 chr19:19545800-19568600 Weak transcription Brain Substantia Nigra brain
25 chr19:19545800-19570600 Weak transcription Brain Cingulate Gyrus brain
26 chr19:19546000-19555000 Weak transcription Adipose Nuclei Adipose
27 chr19:19546000-19555800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
28 chr19:19546000-19558200 Weak transcription Stomach Smooth Muscle stomach
29 chr19:19546000-19558600 Weak transcription Duodenum Smooth Muscle Duodenum
30 chr19:19546000-19566600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
31 chr19:19546200-19554000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
32 chr19:19546200-19555200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
33 chr19:19546200-19555400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
34 chr19:19546200-19569000 Weak transcription Colon Smooth Muscle Colon
35 chr19:19547200-19553800 Weak transcription Primary T killer memory cells from peripheral blood blood
36 chr19:19547200-19555000 Weak transcription NHDF-Ad bronchial
37 chr19:19547400-19555400 Weak transcription ES-I3 Cell Line embryonic stem cell
38 chr19:19547600-19554800 Weak transcription Colonic Mucosa Colon
39 chr19:19547800-19554000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
40 chr19:19547800-19554200 Weak transcription Primary B cells from peripheral blood blood
41 chr19:19547800-19554400 Weak transcription Duodenum Mucosa Duodenum
42 chr19:19547800-19555200 Weak transcription NHLF lung
43 chr19:19547800-19556800 Weak transcription Liver Liver
44 chr19:19547800-19558000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
45 chr19:19548600-19555200 Weak transcription Hela-S3 cervix
46 chr19:19548800-19554200 Weak transcription Primary B cells from cord blood blood
47 chr19:19549000-19554200 Weak transcription HepG2 liver
48 chr19:19549000-19555400 Weak transcription iPS-18 Cell Line embryonic stem cell
49 chr19:19549200-19553800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
50 chr19:19549400-19554000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived

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Last update: Aug 31, 2015