The 2.0 version of rSNPBase

Variant report

Variant rs73530428
Chromosome Location chr19:19568800-19568801
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:137 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:19545800-19570600 Weak transcription Brain Cingulate Gyrus brain
2 chr19:19546200-19569000 Weak transcription Colon Smooth Muscle Colon
3 chr19:19551000-19571200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
4 chr19:19557600-19569000 Weak transcription NH-A brain
5 chr19:19557800-19569400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
6 chr19:19558200-19571400 Weak transcription Brain Germinal Matrix brain
7 chr19:19558600-19570400 Weak transcription HMEC breast
8 chr19:19558800-19568800 Weak transcription iPS-20b Cell Line embryonic stem cell
9 chr19:19558800-19569600 Weak transcription HUES64 Cell Line embryonic stem cell
10 chr19:19559000-19569200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
11 chr19:19559200-19570600 Weak transcription Fetal Brain Female brain
12 chr19:19559400-19569000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
13 chr19:19561400-19569600 Weak transcription H9 Cell Line embryonic stem cell
14 chr19:19561400-19570600 Weak transcription iPS-15b Cell Line embryonic stem cell
15 chr19:19562600-19570400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
16 chr19:19562800-19570200 Weak transcription Brain Inferior Temporal Lobe brain
17 chr19:19562800-19570400 Weak transcription Brain Angular Gyrus brain
18 chr19:19563000-19570200 Weak transcription Fetal Heart heart
19 chr19:19563400-19570600 Weak transcription A549 lung
20 chr19:19563600-19568800 Weak transcription Brain Anterior Caudate brain
21 chr19:19563600-19569000 Enhancers Primary Natural Killer cells fromperipheralblood blood
22 chr19:19563800-19569000 Weak transcription Placenta Amnion Placenta Amnion
23 chr19:19563800-19570400 Weak transcription ES-I3 Cell Line embryonic stem cell
24 chr19:19564000-19568800 Weak transcription Breast Myoepithelial Primary Cells Breast
25 chr19:19564200-19568800 Enhancers Primary neutrophils fromperipheralblood blood
26 chr19:19564400-19569000 Weak transcription Rectal Mucosa Donor 31 rectum
27 chr19:19564400-19569200 Weak transcription Rectal Smooth Muscle rectum
28 chr19:19564400-19571800 Weak transcription Fetal Kidney kidney
29 chr19:19565200-19569800 Enhancers Primary T helper memory cells from peripheral blood 1 blood
30 chr19:19565400-19569400 Enhancers Primary T helper cells PMA-I stimulated --
31 chr19:19565600-19570200 Enhancers Primary T killer naive cells fromperipheralblood blood
32 chr19:19566400-19569400 Enhancers Primary T helper naive cells from peripheral blood blood
33 chr19:19566400-19569800 Enhancers Primary T cells effector/memory enriched fromperipheralblood blood
34 chr19:19566600-19569000 Enhancers Primary T helper naive cells fromperipheralblood blood
35 chr19:19566800-19569600 Genic enhancers Fetal Muscle Trunk muscle
36 chr19:19567000-19568800 Enhancers Primary T helper memory cells from peripheral blood 2 blood
37 chr19:19567000-19568800 Genic enhancers Foreskin Fibroblast Primary Cells skin02 Skin
38 chr19:19567000-19569000 Genic enhancers Fetal Thymus thymus
39 chr19:19567000-19569000 Genic enhancers GM12878-XiMat blood
40 chr19:19567000-19569200 Genic enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
41 chr19:19567000-19569200 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
42 chr19:19567000-19569200 Strong transcription Hela-S3 cervix
43 chr19:19567000-19569800 Genic enhancers K562 blood
44 chr19:19567000-19570200 Enhancers Primary T helper 17 cells PMA-I stimulated --
45 chr19:19567000-19570200 Enhancers Primary T killer memory cells from peripheral blood blood
46 chr19:19567000-19573600 Genic enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
47 chr19:19567000-19575000 Enhancers Spleen Spleen
48 chr19:19567000-19576200 Enhancers Gastric stomach
49 chr19:19567000-19576600 Genic enhancers Fetal Intestine Small intestine
50 chr19:19567200-19568800 Genic enhancers Duodenum Mucosa Duodenum

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Last update: Aug 31, 2015