Variant report

Variant	rs73524674
Chromosome Location	chr19:19435487-19435488
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr19:19434966-19435598	K562	blood:	n/a	n/a
2	POLR2A	chr19:19435418-19435651	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr19:19431916..19433610-chr19:19433768..19435568,2	MCF-7	breast:
2	chr19:19429265..19433955-chr19:19435114..19441517,10	K562	blood:
3	chr19:19435098..19437223-chr19:19438323..19441440,3	K562	blood:

Variant related genes	Relation type
SUGP1	TF binding region
ENSG00000105705	Chromatin interaction
ENSG00000129933	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11878997	1.00[AMR][1000 genomes]
rs11879483	1.00[AMR][1000 genomes]
rs28808149	1.00[AMR][1000 genomes]
rs56786913	1.00[AMR][1000 genomes]
rs57321153	1.00[AMR][1000 genomes]
rs58179637	1.00[AMR][1000 genomes]
rs58210809	1.00[AMR][1000 genomes]
rs59432787	1.00[AMR][1000 genomes]
rs60542032	1.00[AMR][1000 genomes]
rs60635681	1.00[AMR][1000 genomes]
rs61418834	1.00[AMR][1000 genomes]
rs61687899	1.00[AMR][1000 genomes]
rs7247854	1.00[AMR][1000 genomes]
rs73524684	1.00[AMR][1000 genomes]
rs73528412	1.00[AMR][1000 genomes]
rs73530412	1.00[AMR][1000 genomes]
rs73530428	1.00[AMR][1000 genomes]
rs73530433	1.00[AMR][1000 genomes]
rs73532115	1.00[AMR][1000 genomes]
rs73532138	1.00[AMR][1000 genomes]
rs73532145	1.00[AMR][1000 genomes]
rs73532149	1.00[AMR][1000 genomes]
rs73532150	1.00[AMR][1000 genomes]
rs73532158	1.00[AMR][1000 genomes]
rs73539469	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv911303	chr19:19256870-19505087	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv911305	chr19:19303802-19663850	Genic enhancers Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	nsv1056419	chr19:19421218-19510611	Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:19432600-19445400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr19:19432800-19436800	Weak transcription	Small Intestine	intestine
3	chr19:19432800-19438400	Weak transcription	A549	lung
4	chr19:19432800-19445400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr19:19432800-19447400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr19:19433200-19435600	Genic enhancers	Thymus	Thymus
7	chr19:19433200-19439000	Genic enhancers	Primary neutrophils fromperipheralblood	blood
8	chr19:19433200-19452800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr19:19433400-19436000	Genic enhancers	Fetal Muscle Leg	muscle
10	chr19:19433400-19440200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr19:19433400-19469800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr19:19433400-19470600	Strong transcription	Fetal Stomach	stomach
13	chr19:19433600-19435600	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr19:19433600-19448800	Weak transcription	Stomach Mucosa	stomach
15	chr19:19433800-19435600	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr19:19433800-19437800	Strong transcription	Fetal Lung	lung
17	chr19:19433800-19438800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr19:19433800-19468400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr19:19433800-19469800	Strong transcription	Fetal Intestine Large	intestine
20	chr19:19433800-19470400	Strong transcription	Placenta	Placenta
21	chr19:19434000-19435600	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
22	chr19:19434000-19437000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr19:19434000-19437400	Strong transcription	HUES6 Cell Line	embryonic stem cell
24	chr19:19434000-19445600	Strong transcription	Fetal Intestine Small	intestine
25	chr19:19434200-19435600	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr19:19434200-19435600	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr19:19434200-19437200	Genic enhancers	Primary T cells fromperipheralblood	blood
28	chr19:19434200-19437200	Strong transcription	Rectal Mucosa Donor 29	rectum
29	chr19:19434200-19437400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr19:19434200-19469000	Strong transcription	Fetal Thymus	thymus
31	chr19:19434200-19469800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr19:19434200-19469800	Strong transcription	Cortex derived primary cultured neurospheres	brain
33	chr19:19434400-19435600	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
34	chr19:19434400-19435600	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr19:19434400-19435600	Genic enhancers	Brain Cingulate Gyrus	brain
36	chr19:19434400-19435600	Genic enhancers	Brain Hippocampus Middle	brain
37	chr19:19434400-19435600	Genic enhancers	Brain Inferior Temporal Lobe	brain
38	chr19:19434400-19435600	Genic enhancers	Left Ventricle	heart
39	chr19:19434400-19435600	Genic enhancers	Lung	lung
40	chr19:19434400-19435600	Genic enhancers	Pancreas	Pancrea
41	chr19:19434400-19435600	Genic enhancers	Right Ventricle	heart
42	chr19:19434400-19435600	Genic enhancers	Spleen	Spleen
43	chr19:19434400-19435600	Genic enhancers	Dnd41	blood
44	chr19:19434400-19435600	Strong transcription	NHLF	lung
45	chr19:19434400-19436800	Strong transcription	Primary hematopoietic stem cells	blood
46	chr19:19434400-19436800	Strong transcription	HepG2	liver
47	chr19:19434400-19437200	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr19:19434400-19437200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr19:19434400-19437200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr19:19434400-19437200	Strong transcription	Primary monocytes fromperipheralblood	blood

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