Variant report

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10059209	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs11953095	0.88[AFR][1000 genomes]
rs17087294	0.91[EUR][1000 genomes]
rs17630580	1.00[JPT][hapmap]
rs4333338	1.00[ASN][1000 genomes]
rs55733259	0.84[EUR][1000 genomes]
rs55858532	0.84[EUR][1000 genomes]
rs56081352	0.84[EUR][1000 genomes]
rs56190831	0.84[EUR][1000 genomes]
rs56295110	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56363885	0.84[EUR][1000 genomes]
rs57196504	0.87[ASN][1000 genomes]
rs57204547	0.87[ASN][1000 genomes]
rs57608661	0.87[ASN][1000 genomes]
rs58477147	1.00[ASN][1000 genomes]
rs59041418	0.87[ASN][1000 genomes]
rs59152856	0.87[ASN][1000 genomes]
rs59781414	0.87[ASN][1000 genomes]
rs59898871	0.87[ASN][1000 genomes]
rs60218205	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60510178	0.87[ASN][1000 genomes]
rs6862188	0.90[ASN][1000 genomes]
rs6865929	0.87[ASN][1000 genomes]
rs6867338	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6884540	0.87[ASN][1000 genomes]
rs6887763	0.87[ASN][1000 genomes]
rs6888479	0.87[ASN][1000 genomes]
rs6891264	0.90[ASN][1000 genomes]
rs73141197	0.87[ASN][1000 genomes]
rs769335	0.83[AFR][1000 genomes]
rs769336	0.93[ASN][1000 genomes]
rs769338	0.93[ASN][1000 genomes]
rs7702914	0.87[ASN][1000 genomes]
rs7702930	0.87[ASN][1000 genomes]
rs7703449	0.87[ASN][1000 genomes]
rs7720052	0.87[ASN][1000 genomes]
rs7723473	0.87[ASN][1000 genomes]
rs7737977	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432755	chr5:95987984-96657483	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv598962	chr5:96057891-96893164	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv4924	chr5:96391451-96437233	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:96397400-96399800	Enhancers	Fetal Muscle Leg	muscle
2	chr5:96398000-96401000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr5:96398200-96400800	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr5:96398200-96401000	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr5:96398400-96401200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr5:96398800-96399600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr5:96398800-96399800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr5:96399000-96399600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr5:96399200-96399600	Enhancers	Fetal Kidney	kidney

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