Variant report

Variant	rs769338
Chromosome Location	chr5:96401182-96401183
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:96396537..96398150-chr5:96400211..96401928,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10059209	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11948888	0.93[ASN][1000 genomes]
rs12656253	1.00[AMR][1000 genomes]
rs12657704	1.00[AMR][1000 genomes]
rs17630580	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2287902	1.00[AMR][1000 genomes]
rs2303210	1.00[AMR][1000 genomes]
rs3797795	1.00[AMR][1000 genomes]
rs3797850	1.00[AMR][1000 genomes]
rs3806940	1.00[AMR][1000 genomes]
rs4333338	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56295110	0.93[ASN][1000 genomes]
rs57196504	0.93[ASN][1000 genomes]
rs57204547	0.93[ASN][1000 genomes]
rs57608661	0.93[ASN][1000 genomes]
rs57806518	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs58477147	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59041418	0.93[ASN][1000 genomes]
rs59152856	0.93[ASN][1000 genomes]
rs59781414	0.93[ASN][1000 genomes]
rs59898871	0.93[ASN][1000 genomes]
rs60218205	0.93[ASN][1000 genomes]
rs60280354	1.00[AMR][1000 genomes]
rs60510178	0.93[ASN][1000 genomes]
rs6862188	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6865929	0.93[ASN][1000 genomes]
rs6867338	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs6884540	0.93[ASN][1000 genomes]
rs6887763	0.93[ASN][1000 genomes]
rs6887995	1.00[YRI][hapmap]
rs6888479	0.93[ASN][1000 genomes]
rs6891264	0.84[ASN][1000 genomes]
rs73141187	1.00[AMR][1000 genomes]
rs73141192	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73141197	0.93[ASN][1000 genomes]
rs769336	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7702914	0.93[ASN][1000 genomes]
rs7702930	0.93[ASN][1000 genomes]
rs7703449	0.93[ASN][1000 genomes]
rs7720052	0.93[ASN][1000 genomes]
rs7723473	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7737538	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432755	chr5:95987984-96657483	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv598962	chr5:96057891-96893164	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv4924	chr5:96391451-96437233	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:96398400-96401200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:96399600-96402800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr5:96399600-96407400	Weak transcription	Fetal Kidney	kidney
4	chr5:96399800-96405800	Weak transcription	Fetal Muscle Leg	muscle
5	chr5:96400600-96401400	Enhancers	Primary T cells from cord blood	blood
6	chr5:96400800-96401600	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr5:96400800-96401800	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr5:96400800-96402400	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr5:96400800-96403000	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr5:96401000-96401400	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr5:96401000-96401600	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr5:96401000-96401800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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