Variant report

Variant	rs6865929
Chromosome Location	chr5:96417662-96417663
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10059209	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11948888	0.87[ASN][1000 genomes]
rs17630580	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs4333338	0.87[ASN][1000 genomes]
rs56295110	1.00[ASN][1000 genomes]
rs57196504	1.00[ASN][1000 genomes]
rs57204547	1.00[ASN][1000 genomes]
rs57608661	1.00[ASN][1000 genomes]
rs57806518	0.88[ASN][1000 genomes]
rs58477147	0.87[ASN][1000 genomes]
rs59041418	1.00[ASN][1000 genomes]
rs59152856	1.00[ASN][1000 genomes]
rs59781414	1.00[ASN][1000 genomes]
rs59898871	1.00[ASN][1000 genomes]
rs60218205	0.87[ASN][1000 genomes]
rs60510178	1.00[ASN][1000 genomes]
rs6867338	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs6884540	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6887763	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6888479	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73141192	0.91[ASN][1000 genomes]
rs73141197	1.00[ASN][1000 genomes]
rs769336	0.93[ASN][1000 genomes]
rs769338	0.93[ASN][1000 genomes]
rs7702914	1.00[ASN][1000 genomes]
rs7702930	1.00[ASN][1000 genomes]
rs7703449	1.00[ASN][1000 genomes]
rs7720052	1.00[ASN][1000 genomes]
rs7723473	1.00[ASN][1000 genomes]
rs7737538	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432755	chr5:95987984-96657483	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv598962	chr5:96057891-96893164	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv4924	chr5:96391451-96437233	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:96414600-96421400	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr5:96415400-96422800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr5:96416400-96419200	Enhancers	Primary B cells from cord blood	blood
4	chr5:96416800-96418200	Enhancers	Primary T cells from cord blood	blood
5	chr5:96417200-96418200	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr5:96417400-96417800	Enhancers	Stomach Mucosa	stomach
7	chr5:96417400-96418000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr5:96417400-96418200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr5:96417400-96418200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
10	chr5:96417400-96419000	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr5:96417600-96417800	Active TSS	GM12878-XiMat	blood
12	chr5:96417600-96418000	Flanking Active TSS	Primary hematopoietic stem cells	blood
13	chr5:96417600-96418000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
14	chr5:96417600-96418000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr5:96417600-96418000	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr5:96417600-96418000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr5:96417600-96418000	Flanking Active TSS	Dnd41	blood
18	chr5:96417600-96418000	Enhancers	HUVEC	blood vessel
19	chr5:96417600-96418200	Enhancers	Primary B cells from peripheral blood	blood
20	chr5:96417600-96418200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
21	chr5:96417600-96418200	Enhancers	Primary T helper cells PMA-I stimulated	--
22	chr5:96417600-96418200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
23	chr5:96417600-96418200	Active TSS	Pancreatic Islets	Pancreatic Islet

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links