Variant report

Variant	rs4333338
Chromosome Location	chr5:96388442-96388443
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10059209	0.87[ASN][1000 genomes]
rs11948888	1.00[ASN][1000 genomes]
rs56295110	0.87[ASN][1000 genomes]
rs57196504	0.87[ASN][1000 genomes]
rs57204547	0.87[ASN][1000 genomes]
rs57608661	0.87[ASN][1000 genomes]
rs57806518	1.00[EUR][1000 genomes]
rs58477147	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59041418	0.87[ASN][1000 genomes]
rs59152856	0.87[ASN][1000 genomes]
rs59781414	0.87[ASN][1000 genomes]
rs59898871	0.87[ASN][1000 genomes]
rs60218205	1.00[ASN][1000 genomes]
rs60510178	0.87[ASN][1000 genomes]
rs6862188	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6865929	0.87[ASN][1000 genomes]
rs6867338	1.00[ASN][1000 genomes]
rs6884540	0.87[ASN][1000 genomes]
rs6887763	0.87[ASN][1000 genomes]
rs6888479	0.87[ASN][1000 genomes]
rs6891264	0.90[ASN][1000 genomes]
rs73141192	1.00[EUR][1000 genomes]
rs73141197	0.87[ASN][1000 genomes]
rs769336	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs769338	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7702914	0.87[ASN][1000 genomes]
rs7702930	0.87[ASN][1000 genomes]
rs7703449	0.87[ASN][1000 genomes]
rs7720052	0.87[ASN][1000 genomes]
rs7723473	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7737538	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432755	chr5:95987984-96657483	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv598962	chr5:96057891-96893164	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv949058	chr5:96082433-96390619	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv968220	chr5:96387064-96392806	Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:96386800-96397800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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