Variant report

Variant	rs59041418
Chromosome Location	chr5:96413645-96413646
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:96413541..96415661-chr5:96445428..96448359,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10059209	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11948888	0.87[ASN][1000 genomes]
rs17630580	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4333338	0.87[ASN][1000 genomes]
rs56295110	1.00[ASN][1000 genomes]
rs57196504	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57204547	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57608661	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57806518	0.88[ASN][1000 genomes]
rs58477147	0.87[ASN][1000 genomes]
rs59152856	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59781414	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59898871	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60218205	0.87[ASN][1000 genomes]
rs60510178	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6865929	1.00[ASN][1000 genomes]
rs6867338	0.87[ASN][1000 genomes]
rs6884540	1.00[ASN][1000 genomes]
rs6887763	1.00[ASN][1000 genomes]
rs6888479	1.00[ASN][1000 genomes]
rs73141192	0.91[ASN][1000 genomes]
rs73141197	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs769336	0.93[ASN][1000 genomes]
rs769338	0.93[ASN][1000 genomes]
rs7702914	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7702930	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7703449	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7720052	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7723473	1.00[ASN][1000 genomes]
rs7737538	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432755	chr5:95987984-96657483	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv598962	chr5:96057891-96893164	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv4924	chr5:96391451-96437233	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:96411000-96414200	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr5:96411000-96414600	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr5:96411400-96417600	Weak transcription	Primary hematopoietic stem cells	blood
4	chr5:96411800-96414600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr5:96412000-96414000	Weak transcription	Primary B cells from cord blood	blood
6	chr5:96412000-96414200	Weak transcription	Primary B cells from peripheral blood	blood
7	chr5:96412000-96414600	Weak transcription	Primary neutrophils fromperipheralblood	blood

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