Variant report

Variant	rs58477147
Chromosome Location	chr5:96398441-96398442
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10059209	0.87[ASN][1000 genomes]
rs11948888	1.00[ASN][1000 genomes]
rs12656253	1.00[AMR][1000 genomes]
rs12657704	1.00[AMR][1000 genomes]
rs2287902	1.00[AMR][1000 genomes]
rs2303210	1.00[AMR][1000 genomes]
rs3797795	1.00[AMR][1000 genomes]
rs3797850	1.00[AMR][1000 genomes]
rs3806940	1.00[AMR][1000 genomes]
rs4333338	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56295110	0.87[ASN][1000 genomes]
rs57196504	0.87[ASN][1000 genomes]
rs57204547	0.87[ASN][1000 genomes]
rs57608661	0.83[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs57806518	1.00[EUR][1000 genomes]
rs59041418	0.87[ASN][1000 genomes]
rs59152856	0.87[ASN][1000 genomes]
rs59781414	0.87[ASN][1000 genomes]
rs59898871	0.83[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs60218205	1.00[ASN][1000 genomes]
rs60280354	1.00[AMR][1000 genomes]
rs60510178	0.87[ASN][1000 genomes]
rs6862188	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6865929	0.87[ASN][1000 genomes]
rs6867338	1.00[ASN][1000 genomes]
rs6884540	0.87[ASN][1000 genomes]
rs6887763	0.87[ASN][1000 genomes]
rs6888479	0.87[ASN][1000 genomes]
rs6891264	0.90[ASN][1000 genomes]
rs73141187	1.00[AMR][1000 genomes]
rs73141192	1.00[EUR][1000 genomes]
rs73141197	0.87[ASN][1000 genomes]
rs769336	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs769338	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7702914	0.87[ASN][1000 genomes]
rs7702930	0.87[ASN][1000 genomes]
rs7703449	0.87[ASN][1000 genomes]
rs7720052	0.87[ASN][1000 genomes]
rs7723473	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7737538	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432755	chr5:95987984-96657483	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv598962	chr5:96057891-96893164	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv4924	chr5:96391451-96437233	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:96395800-96398800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr5:96397400-96399800	Enhancers	Fetal Muscle Leg	muscle
3	chr5:96398000-96401000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr5:96398200-96400800	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr5:96398200-96401000	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr5:96398400-96401200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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