Variant report

Variant	rs7723473
Chromosome Location	chr5:96407734-96407735
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:96405505..96407862-chr5:96413976..96415782,2	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10059209	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11948888	0.87[ASN][1000 genomes]
rs12656253	1.00[AMR][1000 genomes]
rs12657704	1.00[AMR][1000 genomes]
rs17630580	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2287902	1.00[AMR][1000 genomes]
rs2303210	1.00[AMR][1000 genomes]
rs3797795	1.00[AMR][1000 genomes]
rs3797850	1.00[AMR][1000 genomes]
rs3806940	1.00[AMR][1000 genomes]
rs4333338	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56295110	1.00[ASN][1000 genomes]
rs57196504	1.00[ASN][1000 genomes]
rs57204547	1.00[ASN][1000 genomes]
rs57608661	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs57806518	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58477147	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59041418	1.00[ASN][1000 genomes]
rs59152856	1.00[ASN][1000 genomes]
rs59781414	1.00[ASN][1000 genomes]
rs59898871	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs60218205	0.87[ASN][1000 genomes]
rs60280354	1.00[AMR][1000 genomes]
rs60510178	1.00[ASN][1000 genomes]
rs6862188	0.87[EUR][1000 genomes]
rs6865929	1.00[ASN][1000 genomes]
rs6867338	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs6884540	1.00[ASN][1000 genomes]
rs6887763	1.00[ASN][1000 genomes]
rs6887995	1.00[YRI][hapmap]
rs6888479	1.00[ASN][1000 genomes]
rs73141187	1.00[AMR][1000 genomes]
rs73141192	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73141197	1.00[ASN][1000 genomes]
rs769336	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs769338	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7702914	1.00[ASN][1000 genomes]
rs7702930	1.00[ASN][1000 genomes]
rs7703449	1.00[ASN][1000 genomes]
rs7720052	1.00[ASN][1000 genomes]
rs7737538	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432755	chr5:95987984-96657483	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv598962	chr5:96057891-96893164	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv4924	chr5:96391451-96437233	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:96403400-96411200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr5:96405800-96408400	Weak transcription	Fetal Muscle Trunk	muscle
3	chr5:96405800-96409400	Enhancers	Fetal Muscle Leg	muscle
4	chr5:96406000-96407800	Enhancers	Rectal Smooth Muscle	rectum
5	chr5:96406400-96408600	Enhancers	Colon Smooth Muscle	Colon
6	chr5:96407200-96408800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr5:96407400-96408000	Enhancers	Psoas Muscle	Psoas
8	chr5:96407400-96408400	Enhancers	Fetal Kidney	kidney
9	chr5:96407400-96408600	Enhancers	Skeletal Muscle Female	skeletal muscle

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