Variant report

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10059209	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs11948888	0.87[ASN][1000 genomes]
rs12657704	1.00[MEX][hapmap]
rs17630580	1.00[JPT][hapmap];1.00[MEX][hapmap];0.87[ASN][1000 genomes]
rs2287902	1.00[MEX][hapmap]
rs2303211	1.00[MEX][hapmap]
rs4333338	0.87[ASN][1000 genomes]
rs56295110	1.00[ASN][1000 genomes]
rs57196504	1.00[ASN][1000 genomes]
rs57204547	1.00[ASN][1000 genomes]
rs57608661	1.00[ASN][1000 genomes]
rs57806518	0.88[ASN][1000 genomes]
rs58477147	0.87[ASN][1000 genomes]
rs59041418	1.00[ASN][1000 genomes]
rs59152856	1.00[ASN][1000 genomes]
rs59781414	1.00[ASN][1000 genomes]
rs59898871	1.00[ASN][1000 genomes]
rs60218205	0.87[ASN][1000 genomes]
rs60510178	1.00[ASN][1000 genomes]
rs6865929	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6867338	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs6887763	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6888479	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73141192	0.91[ASN][1000 genomes]
rs73141197	1.00[ASN][1000 genomes]
rs769336	0.93[ASN][1000 genomes]
rs769338	0.93[ASN][1000 genomes]
rs7702914	1.00[ASN][1000 genomes]
rs7702930	1.00[ASN][1000 genomes]
rs7703449	1.00[ASN][1000 genomes]
rs7720052	1.00[ASN][1000 genomes]
rs7723473	1.00[ASN][1000 genomes]
rs7728347	1.00[MEX][hapmap]
rs7737538	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432755	chr5:95987984-96657483	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv598962	chr5:96057891-96893164	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv4924	chr5:96391451-96437233	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:96411400-96417600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr5:96414200-96417400	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr5:96414600-96421400	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr5:96415400-96417600	Weak transcription	GM12878-XiMat	blood
5	chr5:96415400-96422800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr5:96415600-96417600	Weak transcription	Primary B cells from peripheral blood	blood
7	chr5:96416400-96419200	Enhancers	Primary B cells from cord blood	blood
8	chr5:96416800-96418200	Enhancers	Primary T cells from cord blood	blood
9	chr5:96417000-96417400	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr5:96417000-96417600	Enhancers	Dnd41	blood

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