Variant report

Variant	rs11999656
Chromosome Location	chr9:72200566-72200567
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:72198561..72201116-chr9:72205878..72207439,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11139414	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12000827	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12000908	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12006272	0.83[EUR][1000 genomes]
rs12552474	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12553894	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12553941	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12554978	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12555100	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1411439	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1411441	1.00[CEU][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1411442	1.00[CEU][hapmap];0.88[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3927537	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4636268	0.83[EUR][1000 genomes]
rs56654380	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57512468	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs58638129	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs58667541	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58898534	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs59791186	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60759202	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7036538	0.83[EUR][1000 genomes]
rs72717199	0.83[EUR][1000 genomes]
rs72719005	0.83[EUR][1000 genomes]
rs72719017	0.83[EUR][1000 genomes]
rs72719024	0.95[EUR][1000 genomes]
rs73647250	0.83[EUR][1000 genomes]
rs73647252	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73647254	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73647255	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73647256	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73647257	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73647259	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73647260	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73647261	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73647262	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73647263	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73647264	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73647265	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73647266	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7849601	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7861451	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893437	chr9:72118962-72223176	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72180400-72208400	Weak transcription	Gastric	stomach
2	chr9:72186200-72200800	Weak transcription	HSMMtube	muscle
3	chr9:72187400-72204800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr9:72193200-72204400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr9:72195400-72200600	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr9:72195800-72208200	Weak transcription	Fetal Lung	lung
7	chr9:72196000-72204800	Weak transcription	Fetal Brain Male	brain
8	chr9:72196200-72204800	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr9:72196400-72201000	Enhancers	HUVEC	blood vessel
10	chr9:72197200-72201000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr9:72198600-72200800	Enhancers	NHDF-Ad	bronchial
12	chr9:72199000-72204200	Weak transcription	Brain Germinal Matrix	brain
13	chr9:72199200-72200600	Enhancers	NH-A	brain
14	chr9:72199400-72200600	Enhancers	Osteobl	bone
15	chr9:72199600-72204200	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr9:72200000-72200600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr9:72200200-72201200	Enhancers	Fetal Heart	heart
18	chr9:72200400-72200600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr9:72200400-72201000	Enhancers	Skeletal Muscle Female	skeletal muscle

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