Variant report

Variant	rs12553941
Chromosome Location	chr9:72209531-72209532
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11139414	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11999656	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12000827	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12000908	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12006272	0.83[EUR][1000 genomes]
rs12552474	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12553894	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12554978	0.97[EUR][1000 genomes]
rs12555100	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1411439	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1411441	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1411442	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3927537	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4636268	0.83[EUR][1000 genomes]
rs56654380	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57512468	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs58638129	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs58667541	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58898534	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs59791186	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60759202	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7036538	0.83[EUR][1000 genomes]
rs72717199	0.83[EUR][1000 genomes]
rs72719005	0.83[EUR][1000 genomes]
rs72719017	0.83[EUR][1000 genomes]
rs72719024	0.95[EUR][1000 genomes]
rs73647250	0.83[EUR][1000 genomes]
rs73647252	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73647254	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73647255	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73647256	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73647257	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73647259	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73647260	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73647261	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73647262	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73647263	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73647264	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73647265	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73647266	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7849601	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7861451	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893437	chr9:72118962-72223176	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72207000-72216600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr9:72207800-72220200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr9:72208200-72209800	Enhancers	Fetal Lung	lung
4	chr9:72208400-72209600	Enhancers	Brain Germinal Matrix	brain
5	chr9:72208600-72217400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr9:72209200-72214600	Weak transcription	Ovary	ovary
7	chr9:72209200-72214600	Weak transcription	Right Ventricle	heart
8	chr9:72209200-72219600	Weak transcription	Gastric	stomach
9	chr9:72209400-72211600	Weak transcription	Liver	Liver
10	chr9:72209400-72214200	Weak transcription	Fetal Heart	heart
11	chr9:72209400-72214600	Weak transcription	Right Atrium	heart
12	chr9:72209400-72215000	Weak transcription	Fetal Muscle Leg	muscle

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