The 2.0 version of rSNPBase

Variant report

Variant rs12048680
Chromosome Location chr1:161912723-161912724
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:102 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:161824200-161928400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
2 chr1:161861600-161936000 Weak transcription Fetal Intestine Small intestine
3 chr1:161883200-161916000 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
4 chr1:161883400-161928200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
5 chr1:161884600-161927600 Weak transcription NHEK skin
6 chr1:161884800-161922600 Weak transcription Brain Anterior Caudate brain
7 chr1:161885000-161914400 Weak transcription Rectal Mucosa Donor 31 rectum
8 chr1:161885000-161928000 Weak transcription Fetal Adrenal Gland Adrenal Gland
9 chr1:161885800-161919200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
10 chr1:161887000-161918600 Weak transcription Duodenum Smooth Muscle Duodenum
11 chr1:161887000-161928200 Weak transcription Rectal Mucosa Donor 29 rectum
12 chr1:161887200-161914200 Weak transcription Duodenum Mucosa Duodenum
13 chr1:161887200-161915600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
14 chr1:161887200-161929600 Weak transcription Hela-S3 cervix
15 chr1:161891000-161912800 Weak transcription Fetal Muscle Leg muscle
16 chr1:161891000-161915600 Weak transcription Fetal Muscle Trunk muscle
17 chr1:161891800-161915800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
18 chr1:161896200-161916400 Weak transcription Fetal Stomach stomach
19 chr1:161897800-161928400 Weak transcription Cortex derived primary cultured neurospheres brain
20 chr1:161897800-161940000 Weak transcription Brain Germinal Matrix brain
21 chr1:161899400-161914400 Weak transcription Psoas Muscle Psoas
22 chr1:161899800-161918400 Weak transcription Skeletal Muscle Male skeletal muscle
23 chr1:161900000-161914200 Weak transcription Skeletal Muscle Female skeletal muscle
24 chr1:161900000-161916000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
25 chr1:161900200-161918600 Weak transcription Rectal Smooth Muscle rectum
26 chr1:161900600-161914000 Weak transcription HUVEC blood vessel
27 chr1:161900600-161915600 Weak transcription HSMM muscle
28 chr1:161900600-161915600 Weak transcription NHLF lung
29 chr1:161901400-161935400 Weak transcription Fetal Lung lung
30 chr1:161902400-161923000 Weak transcription Brain Substantia Nigra brain
31 chr1:161902800-161943400 Weak transcription Esophagus oesophagus
32 chr1:161903600-161930400 Weak transcription Fetal Brain Female brain
33 chr1:161903800-161914400 Weak transcription Spleen Spleen
34 chr1:161903800-161918800 Weak transcription Pancreatic Islets Pancreatic Islet
35 chr1:161903800-161923800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
36 chr1:161904400-161915600 Weak transcription HSMMtube muscle
37 chr1:161904400-161923200 Weak transcription Brain Cingulate Gyrus brain
38 chr1:161904800-161956600 Weak transcription Fetal Brain Male brain
39 chr1:161905000-161920600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
40 chr1:161905400-161913400 Weak transcription Sigmoid Colon Sigmoid Colon
41 chr1:161906000-161914600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
42 chr1:161906000-161923200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
43 chr1:161906000-161923200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
44 chr1:161906000-161927800 Weak transcription Thymus Thymus
45 chr1:161906800-161918000 Weak transcription Primary T killer memory cells from peripheral blood blood
46 chr1:161906800-161923200 Weak transcription Primary T killer naive cells fromperipheralblood blood
47 chr1:161906800-161928000 Weak transcription Stomach Smooth Muscle stomach
48 chr1:161906800-161932200 Weak transcription Stomach Mucosa stomach
49 chr1:161907000-161919200 Weak transcription Brain Hippocampus Middle brain
50 chr1:161907000-161923200 Weak transcription Primary T helper naive cells from peripheral blood blood

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Last update: Aug 31, 2015