The 2.0 version of rSNPBase

Variant report

Variant rs7552420
Chromosome Location chr1:161840544-161840545
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:75 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:161773400-161854400 Weak transcription Small Intestine intestine
2 chr1:161791800-161842000 Weak transcription Brain Angular Gyrus brain
3 chr1:161795200-161860200 Weak transcription Lung lung
4 chr1:161795800-161859000 Weak transcription Pancreas Pancrea
5 chr1:161805800-161846200 Strong transcription Monocytes-CD14+_RO01746 blood
6 chr1:161808400-161863200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
7 chr1:161808800-161858800 Weak transcription Spleen Spleen
8 chr1:161819800-161852600 Weak transcription NHDF-Ad bronchial
9 chr1:161820600-161849200 Weak transcription Primary T killer memory cells from peripheral blood blood
10 chr1:161823600-161842200 Weak transcription Osteobl bone
11 chr1:161823600-161858800 Weak transcription Thymus Thymus
12 chr1:161823800-161857000 Weak transcription Ovary ovary
13 chr1:161824000-161842400 Weak transcription Muscle Satellite Cultured Cells --
14 chr1:161824000-161854400 Weak transcription NH-A brain
15 chr1:161824000-161859000 Weak transcription Brain Cingulate Gyrus brain
16 chr1:161824200-161841800 Weak transcription NHEK skin
17 chr1:161824200-161842200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
18 chr1:161824200-161854400 Weak transcription Cortex derived primary cultured neurospheres brain
19 chr1:161824200-161928400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
20 chr1:161824400-161853200 Weak transcription HSMM muscle
21 chr1:161824400-161882000 Weak transcription Primary T killer naive cells fromperipheralblood blood
22 chr1:161824600-161853400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
23 chr1:161824600-161858600 Weak transcription Duodenum Smooth Muscle Duodenum
24 chr1:161825200-161840600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
25 chr1:161825200-161855000 Weak transcription Fetal Muscle Leg muscle
26 chr1:161825200-161856400 Weak transcription K562 blood
27 chr1:161825600-161863200 Weak transcription Fetal Heart heart
28 chr1:161825800-161859200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
29 chr1:161826200-161858600 Weak transcription Psoas Muscle Psoas
30 chr1:161826200-161860400 Weak transcription Primary T helper naive cells fromperipheralblood blood
31 chr1:161830400-161844200 Weak transcription Fetal Thymus thymus
32 chr1:161831000-161855000 Weak transcription Skeletal Muscle Female skeletal muscle
33 chr1:161831800-161840800 Weak transcription Stomach Smooth Muscle stomach
34 chr1:161831800-161856400 Weak transcription Left Ventricle heart
35 chr1:161832600-161841400 Weak transcription Hela-S3 cervix
36 chr1:161833000-161855600 Weak transcription Primary hematopoietic stem cells blood
37 chr1:161833800-161842400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
38 chr1:161834000-161841400 Weak transcription HUVEC blood vessel
39 chr1:161834200-161853200 Weak transcription NHLF lung
40 chr1:161834200-161859000 Weak transcription Fetal Adrenal Gland Adrenal Gland
41 chr1:161834400-161841600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
42 chr1:161834400-161852400 Weak transcription Primary T helper naive cells from peripheral blood blood
43 chr1:161834400-161863200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
44 chr1:161834600-161857400 Weak transcription Rectal Mucosa Donor 31 rectum
45 chr1:161834600-161858800 Weak transcription GM12878-XiMat blood
46 chr1:161834600-161859000 Weak transcription Rectal Mucosa Donor 29 rectum
47 chr1:161834600-161859000 Weak transcription Sigmoid Colon Sigmoid Colon
48 chr1:161835000-161856800 Weak transcription Placenta Placenta
49 chr1:161835400-161857200 Weak transcription Dnd41 blood
50 chr1:161835600-161845400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin

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Last update: Aug 31, 2015