The 2.0 version of rSNPBase

Variant report

Variant rs12409482
Chromosome Location chr1:161829170-161829171
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:106 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:161773400-161854400 Weak transcription Small Intestine intestine
2 chr1:161780600-161836600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
3 chr1:161780800-161834000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
4 chr1:161791800-161842000 Weak transcription Brain Angular Gyrus brain
5 chr1:161792200-161838000 Weak transcription Fetal Brain Male brain
6 chr1:161795200-161860200 Weak transcription Lung lung
7 chr1:161795800-161859000 Weak transcription Pancreas Pancrea
8 chr1:161805800-161838200 Strong transcription Primary monocytes fromperipheralblood blood
9 chr1:161805800-161846200 Strong transcription Monocytes-CD14+_RO01746 blood
10 chr1:161808400-161863200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
11 chr1:161808600-161840200 Weak transcription Right Ventricle heart
12 chr1:161808800-161858800 Weak transcription Spleen Spleen
13 chr1:161809400-161838000 Weak transcription HMEC breast
14 chr1:161810600-161835800 Weak transcription Colonic Mucosa Colon
15 chr1:161811400-161838400 Strong transcription Primary B cells from cord blood blood
16 chr1:161811800-161838200 Strong transcription Primary Natural Killer cells fromperipheralblood blood
17 chr1:161813000-161834200 Weak transcription Esophagus oesophagus
18 chr1:161815200-161834600 Strong transcription Primary T helper cells fromperipheralblood blood
19 chr1:161816400-161829800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
20 chr1:161819800-161852600 Weak transcription NHDF-Ad bronchial
21 chr1:161820000-161833000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
22 chr1:161820600-161832400 Weak transcription HUES6 Cell Line embryonic stem cell
23 chr1:161820600-161849200 Weak transcription Primary T killer memory cells from peripheral blood blood
24 chr1:161822000-161836000 Weak transcription HepG2 liver
25 chr1:161822800-161836200 Weak transcription Aorta Aorta
26 chr1:161823400-161833000 Weak transcription Fetal Stomach stomach
27 chr1:161823400-161833200 Weak transcription Skeletal Muscle Male skeletal muscle
28 chr1:161823600-161839200 Weak transcription Brain Anterior Caudate brain
29 chr1:161823600-161842200 Weak transcription Osteobl bone
30 chr1:161823600-161858800 Weak transcription Thymus Thymus
31 chr1:161823800-161833000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
32 chr1:161823800-161833400 Weak transcription NHLF lung
33 chr1:161823800-161857000 Weak transcription Ovary ovary
34 chr1:161824000-161829600 Weak transcription Brain Substantia Nigra brain
35 chr1:161824000-161830200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
36 chr1:161824000-161830800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
37 chr1:161824000-161831600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
38 chr1:161824000-161835800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
39 chr1:161824000-161836000 Weak transcription Fetal Kidney kidney
40 chr1:161824000-161838200 Weak transcription HSMMtube muscle
41 chr1:161824000-161840400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
42 chr1:161824000-161842400 Weak transcription Muscle Satellite Cultured Cells --
43 chr1:161824000-161854400 Weak transcription NH-A brain
44 chr1:161824000-161859000 Weak transcription Brain Cingulate Gyrus brain
45 chr1:161824200-161830400 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
46 chr1:161824200-161832600 Weak transcription A549 lung
47 chr1:161824200-161836000 Weak transcription Colon Smooth Muscle Colon
48 chr1:161824200-161838000 Weak transcription HUES48 Cell Line embryonic stem cell
49 chr1:161824200-161838800 Weak transcription Fetal Lung lung
50 chr1:161824200-161841800 Weak transcription NHEK skin

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Last update: Aug 31, 2015