The 2.0 version of rSNPBase

Variant report

Variant rs2340824
Chromosome Location chr1:161746772-161746773
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:94 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:161736800-161752000 Weak transcription Lung lung
2 chr1:161736800-161754000 Weak transcription Colonic Mucosa Colon
3 chr1:161736800-161757200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
4 chr1:161737000-161751600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
5 chr1:161737000-161752000 Weak transcription Left Ventricle heart
6 chr1:161737000-161765600 Weak transcription Aorta Aorta
7 chr1:161737200-161748000 Enhancers Primary T helper naive cells from peripheral blood blood
8 chr1:161737200-161751200 Weak transcription Placenta Placenta
9 chr1:161737200-161751400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
10 chr1:161737200-161752200 Weak transcription Psoas Muscle Psoas
11 chr1:161737200-161752600 Weak transcription Esophagus oesophagus
12 chr1:161737200-161752800 Weak transcription HSMMtube muscle
13 chr1:161737200-161761600 Weak transcription Fetal Brain Male brain
14 chr1:161737200-161761600 Weak transcription Right Ventricle heart
15 chr1:161737200-161775200 Weak transcription Fetal Stomach stomach
16 chr1:161737200-161775800 Weak transcription Stomach Mucosa stomach
17 chr1:161737200-161780000 Weak transcription Fetal Intestine Small intestine
18 chr1:161737400-161750400 Weak transcription Fetal Intestine Large intestine
19 chr1:161737400-161751400 Weak transcription Osteobl bone
20 chr1:161737400-161752200 Weak transcription HSMM muscle
21 chr1:161737600-161751400 Weak transcription NHDF-Ad bronchial
22 chr1:161737600-161752000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
23 chr1:161737600-161762000 Weak transcription Fetal Lung lung
24 chr1:161737600-161764600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
25 chr1:161737800-161750400 Weak transcription Brain Germinal Matrix brain
26 chr1:161738000-161752400 Weak transcription Duodenum Mucosa Duodenum
27 chr1:161738200-161752200 Weak transcription Rectal Mucosa Donor 29 rectum
28 chr1:161738200-161753600 Weak transcription Rectal Smooth Muscle rectum
29 chr1:161738200-161760200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
30 chr1:161738400-161751200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
31 chr1:161738400-161754000 Weak transcription Fetal Brain Female brain
32 chr1:161738600-161747600 Weak transcription Primary Natural Killer cells fromperipheralblood blood
33 chr1:161738600-161752200 Weak transcription HepG2 liver
34 chr1:161738600-161752600 Weak transcription Stomach Smooth Muscle stomach
35 chr1:161738600-161753800 Weak transcription Skeletal Muscle Male skeletal muscle
36 chr1:161738600-161794000 Weak transcription Pancreas Pancrea
37 chr1:161738600-161795600 Weak transcription Gastric stomach
38 chr1:161739400-161752600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
39 chr1:161739400-161753800 Weak transcription NH-A brain
40 chr1:161739400-161753800 Weak transcription NHEK skin
41 chr1:161739600-161750600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
42 chr1:161740200-161751600 Weak transcription Colon Smooth Muscle Colon
43 chr1:161740400-161761800 Weak transcription Ovary ovary
44 chr1:161741600-161748000 Enhancers Primary T helper naive cells fromperipheralblood blood
45 chr1:161741600-161752000 Weak transcription Brain Anterior Caudate brain
46 chr1:161741800-161750400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
47 chr1:161741800-161752600 Weak transcription Spleen Spleen
48 chr1:161742000-161747000 Enhancers Primary T cells from cord blood blood
49 chr1:161742000-161752200 Weak transcription Rectal Mucosa Donor 31 rectum
50 chr1:161742000-161754000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain

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Last update: Aug 31, 2015