The 2.0 version of rSNPBase

Variant report

Variant rs6680543
Chromosome Location chr1:161751163-161751164
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:106 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:161736800-161752000 Weak transcription Lung lung
2 chr1:161736800-161754000 Weak transcription Colonic Mucosa Colon
3 chr1:161736800-161757200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
4 chr1:161737000-161751600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
5 chr1:161737000-161752000 Weak transcription Left Ventricle heart
6 chr1:161737000-161765600 Weak transcription Aorta Aorta
7 chr1:161737200-161751200 Weak transcription Placenta Placenta
8 chr1:161737200-161751400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
9 chr1:161737200-161752200 Weak transcription Psoas Muscle Psoas
10 chr1:161737200-161752600 Weak transcription Esophagus oesophagus
11 chr1:161737200-161752800 Weak transcription HSMMtube muscle
12 chr1:161737200-161761600 Weak transcription Fetal Brain Male brain
13 chr1:161737200-161761600 Weak transcription Right Ventricle heart
14 chr1:161737200-161775200 Weak transcription Fetal Stomach stomach
15 chr1:161737200-161775800 Weak transcription Stomach Mucosa stomach
16 chr1:161737200-161780000 Weak transcription Fetal Intestine Small intestine
17 chr1:161737400-161751400 Weak transcription Osteobl bone
18 chr1:161737400-161752200 Weak transcription HSMM muscle
19 chr1:161737600-161751400 Weak transcription NHDF-Ad bronchial
20 chr1:161737600-161752000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
21 chr1:161737600-161762000 Weak transcription Fetal Lung lung
22 chr1:161737600-161764600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
23 chr1:161738000-161752400 Weak transcription Duodenum Mucosa Duodenum
24 chr1:161738200-161752200 Weak transcription Rectal Mucosa Donor 29 rectum
25 chr1:161738200-161753600 Weak transcription Rectal Smooth Muscle rectum
26 chr1:161738200-161760200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
27 chr1:161738400-161751200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
28 chr1:161738400-161754000 Weak transcription Fetal Brain Female brain
29 chr1:161738600-161752200 Weak transcription HepG2 liver
30 chr1:161738600-161752600 Weak transcription Stomach Smooth Muscle stomach
31 chr1:161738600-161753800 Weak transcription Skeletal Muscle Male skeletal muscle
32 chr1:161738600-161794000 Weak transcription Pancreas Pancrea
33 chr1:161738600-161795600 Weak transcription Gastric stomach
34 chr1:161739400-161752600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
35 chr1:161739400-161753800 Weak transcription NH-A brain
36 chr1:161739400-161753800 Weak transcription NHEK skin
37 chr1:161740200-161751600 Weak transcription Colon Smooth Muscle Colon
38 chr1:161740400-161761800 Weak transcription Ovary ovary
39 chr1:161741600-161752000 Weak transcription Brain Anterior Caudate brain
40 chr1:161741800-161752600 Weak transcription Spleen Spleen
41 chr1:161742000-161752200 Weak transcription Rectal Mucosa Donor 31 rectum
42 chr1:161742000-161754000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
43 chr1:161742400-161752000 Weak transcription Sigmoid Colon Sigmoid Colon
44 chr1:161742400-161752800 Weak transcription Duodenum Smooth Muscle Duodenum
45 chr1:161742400-161773000 Weak transcription Small Intestine intestine
46 chr1:161743600-161751800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
47 chr1:161744200-161752000 Weak transcription Adipose Nuclei Adipose
48 chr1:161744600-161752400 Weak transcription Dnd41 blood
49 chr1:161744800-161752000 Weak transcription K562 blood
50 chr1:161744800-161752400 Weak transcription Brain Substantia Nigra brain

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Last update: Aug 31, 2015